Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1115 109 7e-19 >seq1115 Length=78361 Score = 109 bits (120), Expect = 7e-19 Identities = 198/285 (69%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 193301 TGAAACAATGTATTGCGGGTTTACTGGTaaaaaaaTTGAAAATA-AAATTTTTATAGGGC 193359 ||||| |||||| || |||||||| || |||||| || | ||||||| |||| | Sbjct 34853 TGAAATTATGTATAATGGATTTACTGG-AAGAAAATTAAATTCACAAATTTTCTTAGGAC 34911 Query 193360 CAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATG 193419 |||||||||| || ||| | ||||| |||||| | |||||||| ||| | | || || Sbjct 34912 CAACTTATTATCAACGTTTAAAACATATGGTTGATGATAAAATTCATAGTCGTTCTCGTG 34971 Query 193420 GGCAAGT--GACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTT 193477 | | || | ||||| |||| ||||| | |||||| || | ||| ||| | Sbjct 34972 GTCCTGTTCAAATACTT--AATCGTCAACCTATGGAAGGTCGTAGTCGTGATGGTGGTCT 35029 Query 193478 AAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAA 193537 | | ||||| ||||||||| || ||| ||| |||||||| | ||||| ||| Sbjct 35030 ACGTTTTGGTGAAATGGAACGTGATTGTCAAATAGCACATGGTGCAGCACAATTTTTACG 35089 Query 193538 TGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTG 193582 |||| | | ||||| | |||||| | |||||| ||||||| Sbjct 35090 TGAACGTTTATTTTTTGCTAGTGATCCATATCAAGTGTATGTTTG 35134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628296805002240