Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4589 246 2e-59 seq2017 158 9e-33 seq6726 120 2e-21 >seq4589 Length=1669 Score = 246 bits (272), Expect = 2e-59 Identities = 549/814 (67%), Gaps = 20/814 (2%) Strand=Plus/Plus Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATT 282135 || |||||| ||||||||||||||||| || || | || || || ||| |||| Sbjct 16 TGTACGTTTCGCACGTTCACATGCTGTTCTCAGGCGACGCAATGCAC--GCTTATTGTCA 73 Query 282136 CAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--AGACGAT 282191 | ||| | ||| || |||| ||| ||| |||| ||| | || | || ||||||| Sbjct 74 CGAATGTCTTTACTAAATTTCTTCTGGAACTCTTTCACAAAG--TGATCCACCAGACGAT 131 Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 | |||||||||||||||||||| | |||| || | |||| | || | ||| | | Sbjct 132 TGTCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGAATATAC 191 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 |||| |||| | ||| | | |||||| || |||||||||| |||||| || | | Sbjct 192 CATCCTCAATTGTCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATATCAACA 251 Query 282312 CATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 |||| || | || || || | |||||| |||| || ||||| || || | Sbjct 252 CATTACGCTCACCACCAACCTTCTTGTCTAAACCATAGGCAATTGCCGCAGCTGTCGGCT 311 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 ||||||| |||||||| |||||||||||||| || ||||||||||| || ||||| | Sbjct 312 CATTAATGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGAC 371 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCTTTTCCA 282490 ||| || || || || |||||||| || ||||| || || ||||| || | ||| Sbjct 372 GTTGACTGTCATTGAAGTAAGCAGGAACTGTTATAACCGCGTCACTTACTGTCCTGCCCA 431 Query 282491 ATATAAGCGCTT---GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC- 282546 | |||| ||| || | |||||||| | || | ||| || ||||| | || Sbjct 432 A-ATAA---CTTTCAGCAACCTCCTTCATTTTCGTCAACACCATCGACGAAATCTCCTCC 487 Query 282547 -TGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAA 282605 |||||| | ||| ||| | ||| || || | | ||| ||| | Sbjct 488 GCGGAGAACA--ACTTTTTCTCACCCTTATACTCAACACGAATCTTCAGCTTACCACCGA 545 Query 282606 CATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAAT 282665 | | || || | ||||||||||| |||||||| ||||| | | |||| ||| Sbjct 546 CTTGAACCACCTCAAATGGCCAATGCTTCATATCACTCTGAACTGATGGATCATCGAAAC 605 Query 282666 CTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGAT 282725 | ||| |||| || || |||||||| | ||||| |||||||||| || |||| | Sbjct 606 GACGACCGATTAGCCGCTTCGCATCAAACACTGTATTTGTTGGATTAATAGCCACTTGGT 665 Query 282726 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTG 282785 || ||| |||| ||||| | | | || | ||||| || | ||||| || || | Sbjct 666 TCTTCGCTCCATCACCAATTAAACGCTCAGCATCTGTGAACGCCACATAACTCGGTGTCG 725 Query 282786 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 282845 | | ||||| |||||||| ||||| || || ||||| |||| || | ||||| |||| Sbjct 726 TTCTGTTACCCTGATCATTGGCAATTATCTCCACTTTGCCATGCTGGAAAACACCAACAC 785 Query 282846 AACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 | | | ||||| || | ||| || ||||| || Sbjct 786 ACGAATATGTTGTACCAAGATCGATCCCAATGGC 819 >seq2017 Length=18414 Score = 158 bits (174), Expect = 9e-33 Identities = 381/571 (67%), Gaps = 18/571 (3%) Strand=Plus/Minus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 || ||||| || | |||||| || || | |||| | || |||| | ||||| ||| Sbjct 4704 GTACCACCTCCAAGATCAAATATCAGAATATTCTTCTCACCATCTT---TCTTATCTAGA 4648 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || |||| ||||||||||||||||||||||| || | | | ||| | ||||||| Sbjct 4647 CCGTAAGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGGAGTATATTCAAACCAGCA 4588 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| | || |||||||| || || || | |||| |||||||||||| || || ||||| Sbjct 4587 ATTGTGCCAGCATCTTTGGTTGCCTGGCGCTGTGCATCGTTAAAATAGGCTGGGACAGTG 4528 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTT 282523 | || |||| || || | ||| |||| ||| | || | |||||| || | | Sbjct 4527 ACTACTGCATGGGTAACCTTTTTGCCAAGATAGGATTCAGCAAACTCTTTCATCTTCCCT 4468 Query 282524 AAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGAT-----ATG 282578 || | ||| | || || | ||||| | | | |||| ||| |||| || Sbjct 4467 AACACCATAGCAGAGATCTCCTCTGGGGCAAACGTCTTGACTTC----TGATCCAACGTG 4412 Query 282579 ATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATAT 282638 | ||||| | ||||||||| || ||||| ||| ||| || ||| | || | Sbjct 4411 A-ACTTCGATATATGGTTTGTTCTTTTTATTAACAACGGAAAAAGGGTAATGAGTTATGT 4353 Query 282639 CTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAG 282698 | ||| ||| || |||| || | || ||||| | || || | || ||||| | Sbjct 4352 CATTTTGTACAGTTGATTCATCGAACTTCCTTCCAATAAGTCTCTTGACGTCGAAAATTG 4293 Query 282699 TATTGGTTGGATTAACTG-CAGCTTGATATTTGGCTGCATCTCCAATCA---GATGTTCT 282754 | || |||||| || |||| || | ||| || ||||| ||||| | | | || Sbjct 4292 TGTTTTCTGGATTTGATGTCAGC-TGGTTTTTAGCAGCATCCCCAATTAATCGCTCGCCT 4234 Query 282755 GTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATT 282814 | || |||| || ||||| ||||| | | ||||| ||||||||||||||||| Sbjct 4233 TCCGGAGTGAATGCTACGTATGAGGGAGTAATCCTGTTACCCTGATCATTCGCAATAATC 4174 Query 282815 TCAACTTTACCATTTTGCCATACACCTACAC 282845 |||||| || ||| ||||||| |||| Sbjct 4173 TCAACTCGGCCTCCTTGAAATACACCAACAC 4143 Score = 87.8 bits (96), Expect = 1e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 ||| |||||| |||| || || ||||||||||||||||| || || | || |||| Sbjct 4652 CTAGACCGTAAGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGGAGTATATTCAAAC 4593 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | |||||| | ||| ||| ||||| || | |||||| || |||||||| ||||| | Sbjct 4592 CAGCAATTGTGCCAGCATCTTTGGTTGCCTGGCGCTGTGCATCGTTAAAATAGGCTGGGA 4533 Query 86234 CAGTAATAACTGC 86246 |||| | ||||| Sbjct 4532 CAGTGACTACTGC 4520 >seq6726 Length=1151 Score = 120 bits (132), Expect = 2e-21 Identities = 353/537 (66%), Gaps = 8/537 (1%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| | |||| || || |||||||| || || || | |||||| || || ||||| Sbjct 679 TTGTCAACAGCAGATACGTTCAGAATACCGTTCGCGTCTATATCAAACGTCACCTCAATC 620 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 || || || | ||||||||||||| ||| | | || | || || ||| Sbjct 619 TGGGGAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTCGAACTTGCCAAGCAGATTG 560 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || || || | || ||||||||||| | |||||| || ||| || || Sbjct 559 TTGTCCTTCGTCAGAGCACGCTCACCCTCGAACACCTGGATAAGCACACCAGGCTGGTTG 500 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAA 281654 || || || || || || | | || | | || |||||||| || || | | || Sbjct 499 TCCGAGTACGTCGTGAA--CGTTTGAGTCTGCTTCGTCGGAATTGTCGTATTACGCTTAA 442 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | | ||||| | ||||||||| ||||| | ||| || || | |||| || |||| Sbjct 441 TCAGAGCCGTCATTACACCACCAGCCGTTTCAAGACCCAGTGACAATGGAGCCACGTCAA 382 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATA 281773 | | | | || | ||| || || | |||| ||||||||||| || | | Sbjct 381 GCAACAGCAAGTCCTGCACAGCCTCA-CACTTGTCACCACTTAGAATAGCTGCCTGCACA 323 Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 281833 || |||||||| || ||||||||||| ||||||| || || || | | || || ||| Sbjct 322 GCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAACTCCTTCCCGTTG 263 Query 281834 AAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 281892 || || | || || | || | |||||||| ||||||| || || ||||| || || Sbjct 262 AAGAAGTCCTGCAACAGCTTCT-GCACCTTAGGGATACGAGTGGAACCACCAACCAACAC 204 Query 281893 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949 ||||| || | ||| | ||||||| || | ||| ||| | || ||||| || Sbjct 203 TATTTCGTGAATCTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGG 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739165676678484