Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq26094 102 8e-17 seq1104 102 8e-17 >seq26094 Length=224 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| ||||||||||| || || ||| | || || |||||||| || Sbjct 197 GTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA-TCTTCCAGCTGCTTCCC 139 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||||||||| || || ||||| || || ||||| ||| Sbjct 138 AGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTTATCTTGAATCTTAGCCTT 79 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | || || || || | |||| ||||| || |||| || Sbjct 78 CACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGT 19 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 18 CTTCACAAAAATCTGCAT 1 >seq1104 Length=79538 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| ||||||||||| || || ||| | || || |||||||| || Sbjct 61691 GTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA-TCTTCCAGCTGCTTCCC 61633 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||| || ||||| ||||| ||||| || || |||||| ||| Sbjct 61632 AGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGGATCTTAGCCTT 61573 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | || || || || | |||| ||||| || |||| || Sbjct 61572 CACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGT 61513 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 61512 CTTCACAAAAATCTGCAT 61495 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| ||||||||||| || || ||| | || || |||||||| || Sbjct 61919 GTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA-TCTTCCAGCTGCTTCCC 61861 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||| || ||||| ||||| ||||| || || |||||| ||| Sbjct 61860 AGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGGATCTTAGCCTT 61801 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | || || || || | |||| ||||| || |||| || Sbjct 61800 CACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGT 61741 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 61740 CTTCACAAAAATCTGCAT 61723 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| ||||||||||| || || ||| | || || |||||||| || Sbjct 62147 GTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA-TCTTCCAGCTGCTTCCC 62089 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||| || ||||| ||||| ||||| || || ||||| ||| Sbjct 62088 AGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGAATCTTAGCCTT 62029 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | || || || || | |||| ||||| || |||| || Sbjct 62028 CACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGT 61969 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 61968 CTTCACAAAAATCTGCAT 61951 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| ||||||||||| || || ||| | || || |||||||| || Sbjct 62375 GTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA-TCTTCCAGCTGCTTCCC 62317 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||| || ||||| ||||| ||||| || || ||||| ||| Sbjct 62316 AGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGAATCTTAGCCTT 62257 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | || || || || | |||| ||||| || |||| || Sbjct 62256 CACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGT 62197 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 62196 CTTCACAAAAATCTGCAT 62179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483240520298160