Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq267 113 1e-19 seq105 93.3 1e-13 >seq267 Length=377552 Score = 113 bits (124), Expect = 1e-19 Identities = 344/522 (66%), Gaps = 35/522 (7%) Strand=Plus/Plus Query 304979 CAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGAT 305038 ||||| | |||||||||| |||||||||||||||||||| |||||||| |||||||| Sbjct 276592 CAACGACTCAAAGGTAAAGCTGGTCGTATTCGAGGTAATCTTATGGGAAAGCGTGTTGAC 276651 Query 305039 TTTAGTGCAAGAAGTGTAATCACACCTGAT-----TCTCAAATTAGTCTTCATGAATTAG 305093 || || | | ||| |||||| | || |||||| |||| || || ||| Sbjct 276652 TTCTCAGCTCGTACTGTTATCACAGCCGACCCCAATCTCAATTTAG-----ATCAAGTAG 276706 Query 305094 GAGTTCCAATTGAAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATA 305153 | || ||| ||| ||| ||| ||||| | ||| ||| ||||| | || | Sbjct 276707 GCGTCCCACGAACAATAGCTCAAAATCTAACTTATCCTGAGGTAGTTACTCAATTTAACA 276766 Query 305154 TTAAACATTTG-AGACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTC-GTGC 305211 | | || ||| | | | | || | ||||||| | ||||| |||||| || Sbjct 276767 TAGATCACTTGCAAAAGCTA-GTACAGAATGGAAC---CCTTTATCCTGGTGCTAAGT-- 276820 Query 305212 TGTTATAAAACACAAGCAAAAGAAGACAATATCTTTGAACCATATCGATTTAAAACAATT 305271 ||||| || || || | ||| ||| | || ||||| |||| || Sbjct 276821 --TTATAGTACGTGAG--AATGGAGATCGTATAGATTTACGATATCATCCTAAAGT--TT 276874 Query 305272 CAG---TAAAATGCTTGAAATTAATGATATTGTTATCAGACATTTG---AATGACAATGA 305325 ||| ||| | ||| | || | | |||||| | ||| || ||||| ||| Sbjct 276875 CAGACCTAACA--CTTCAGGTTGGTTACATTGTTGAGCGGCATATGTTAAATGA---TGA 276929 Query 305326 TTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGT 305385 | || | |||||| | |||||| | || |||||||||||||||||| |||| || Sbjct 276930 CTTTGTGATATTCAATCGTCAACCAACGCTTCATAAAATGTCTATGATGTGTCATCGTGT 276989 Query 305386 CAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGC 305445 ||||| || || | | || ||||| |||||| || || | | | ||||||||||| Sbjct 276990 TAAAGTCTTGCCTTGGTCTACGTTTCGTTTAAATCTATCTGTTACTTCACCTTATAATGC 277049 Query 305446 GGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||| ||||| ||||||||||| | ||| | || ||||| Sbjct 277050 TGATTTCGATGGCGATGAAATGAACTTACATCTCCCACAATC 277091 >seq105 Length=578600 Score = 93.3 bits (102), Expect = 1e-13 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 167240 CATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAA 167298 ||| | |||||| |||||||| |||||| |||| ||||||||||| ||||||| || | Sbjct 468943 CATCATACCACCGGCATTATCAAATTCAC-CGCAATAATTTGGTGCAGAAAATAAGGTTA 469001 Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 |||| | |||| | || |||||| ||||||||||||| |||| ||| || || Sbjct 469002 CTAACTGACGACGACAGAAAAATTCAAAACCATCTTCAACTACTTGATGCGCTCG 469056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186359143032474