Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1104 131 1e-25 seq26094 123 2e-23 seq2294 98.7 7e-16 >seq1104 Length=79538 Score = 131 bits (144), Expect = 1e-25 Identities = 177/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 33509 AAATAAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTA 33568 ||||||||| | ||| || | | ||| |||||||| || |||||| |||||| || | Sbjct 62417 AAATAAAAT--TAACCTCCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGA 62360 Query 33569 TGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCT 33628 | |||||||| || | ||| || | || |||| || || || ||||| |||| ||||| Sbjct 62359 TATTGTAATCAGACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCT 62300 Query 33629 GCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTG 33687 | ||||| | || | |||||||| || ||| || |||| ||| ||| |||| Sbjct 62299 GTTGATCGGGTGGGATTCCTTCTTTATCTTGAATCTTAGCCTTCA-CATTCTCAATGGTG 62241 Query 33688 TCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGC 33747 || || | ||| || || | |||||||||||||| || || || || ||||| |||||| Sbjct 62240 TCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGC 62181 Query 33748 ATA 33750 ||| Sbjct 62180 ATA 62178 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || |||||| |||||| || || |||||||| || Sbjct 62178 ACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGA 62119 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || |||| || || || ||||| |||| |||||| ||||| | || Sbjct 62118 CAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGG 62059 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | |||||||| || ||| || |||| ||| ||| |||||| || | ||| | Sbjct 62058 GATTCCTTCTTTATCTTGAATCTTAGCCTTCA-CATTCTCAATGGTGTCACTCGGTTCGA 62000 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||||||||||| || || || || ||||| ||||||||| Sbjct 61999 CTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCATA 61950 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || |||||| |||||| || || |||||||| || Sbjct 61950 ACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGA 61891 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || |||| || || || ||||| |||| |||||| ||||| | || Sbjct 61890 CAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGG 61831 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | |||||||| || || || |||| ||| ||| |||||| || | ||| | Sbjct 61830 GATTCCTTCTTTATCTTGGATCTTAGCCTTCA-CATTCTCAATGGTGTCACTCGGTTCGA 61772 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||||||||||| || || || || ||||| ||||||||| Sbjct 61771 CTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCATA 61722 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || |||||| |||||| || || |||||||| || Sbjct 61722 ACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGA 61663 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || |||| || || || ||||| |||| |||||| ||||| | || Sbjct 61662 CAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGG 61603 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | |||||||| || || || |||| ||| ||| |||||| || | ||| | Sbjct 61602 GATTCCTTCTTTATCTTGGATCTTAGCCTTCA-CATTCTCAATGGTGTCACTCGGTTCGA 61544 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | |||||||||||||| || || || || ||||| |||||||| Sbjct 61543 CTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 >seq26094 Length=224 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| |||||||| || |||||| |||||| || || |||||||| || | ||| || | Sbjct 216 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACC 157 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || |||| || || || ||||| |||| ||||||||| || | || | |||||||| Sbjct 156 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTT 97 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || ||| || |||| ||| ||| |||||| || | ||| || || | |||| Sbjct 96 ATCTTGAATCTTAGCCTTCA-CATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGA 38 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||||||| || || || || ||||| |||||||| Sbjct 37 TCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq2294 Length=11734 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || |||||||| || || || || ||| | || ||||| || || || || || Sbjct 1533 CTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 1474 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||||| || || || | || | |||||||||||| |||||| |||| |||| Sbjct 1473 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATTTTAGCTTTC-ACAT 1415 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | || || || | || || || | || ||||| ||||| | ||||| || | Sbjct 1414 TCTCAATAGTATCACTAGGCTCAACCTCTAACGGAATCGTCTTACCAGGCAACGTCTTCA 1355 Query 33737 CAAAGATCTGCAT 33749 ||||||| ||||| Sbjct 1354 CAAAGATTTGCAT 1342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328584482609280