Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq26094 136 9e-27 seq1104 127 5e-24 seq2294 109 1e-18 seq52 104 6e-17 seq523 93.3 1e-13 >seq26094 Length=224 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || |||||||||||||||||||| ||| |||| Sbjct 4 CAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGTGAC 63 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||| |||||||||||| || ||| || Sbjct 64 ACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCCGACCAGCAG 123 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| |||||||||| | || ||| | |||||||| || Sbjct 124 CGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAATATC 183 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| ||||||||| | || ||| | ||||| Sbjct 184 CAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCG 221 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | ||| || | ||||||||| ||||||||||||| ||| || |||| ||| || Sbjct 221 CGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTA 162 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||||||||||||||| || || ||||| || || || || Sbjct 161 CGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTG 118 >seq1104 Length=79538 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || |||||||||||||||||||| ||| |||| Sbjct 61954 CAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGTGAC 62013 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||| ||||||||||| || || || Sbjct 62014 ACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAACAG 62073 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| |||||||||| | || ||| | |||||||| || Sbjct 62074 CGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAATATC 62133 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| ||||||||| | || ||| | ||||| Sbjct 62134 CAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCG 62171 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || |||||||||||||||||||| ||| |||| Sbjct 62182 CAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGTGAC 62241 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||| ||||||||||| || || || Sbjct 62242 ACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAACAG 62301 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| |||||||||| | || ||| | |||||||| || Sbjct 62302 CGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAATATC 62361 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| ||||||||| | || ||| | ||||| Sbjct 62362 CAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCG 62399 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || |||||||||||||||||||| ||| |||| Sbjct 61498 CAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGTGAC 61557 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| ||||||||||| || || || Sbjct 61558 ACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAACAG 61617 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| |||||||||| | || ||| | |||||||| || Sbjct 61618 CGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAATATC 61677 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| ||||||||| | || ||| | ||||| Sbjct 61678 CAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCG 61715 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || |||||||||||||||||||| ||| |||| Sbjct 61726 CAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGTGAC 61785 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| ||||||||||| || || || Sbjct 61786 ACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAACAG 61845 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| |||||||||| | || ||| | |||||||| || Sbjct 61846 CGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAATATC 61905 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| ||||||||| | || ||| | ||||| Sbjct 61906 CAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCG 61943 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | ||| || | ||||||||| ||||||||||||| ||| || |||| ||| || Sbjct 61715 CGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTA 61656 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || || ||||| || || |||||| Sbjct 61655 CGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGA 61611 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | ||| || | ||||||||| ||||||||||||| ||| || |||| ||| || Sbjct 61943 CGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTA 61884 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || || ||||| || || |||||| Sbjct 61883 CGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGA 61839 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | ||| || | ||||||||| ||||||||||||| ||| || |||| ||| || Sbjct 62171 CGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTA 62112 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || || ||||| || || |||||| Sbjct 62111 CGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGA 62067 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | ||| || | ||||||||| ||||||||||||| ||| || |||| ||| || Sbjct 62399 CGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTA 62340 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || || ||||| || || |||||| Sbjct 62339 CGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGA 62295 >seq2294 Length=11734 Score = 109 bits (120), Expect = 1e-18 Identities = 104/132 (79%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| |||||||| |||||||| ||| || ||| ||| | | || ||||| Sbjct 1192 AAAGCTAAA-ATTCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATATTCGC 1250 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || |||||||||||||||||| | ||| || | || |||||| ||||||||||||| || Sbjct 1251 TGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGAC 1310 Query 206367 TCTTCACCTTGT 206378 ||| || ||||| Sbjct 1311 TCTGCATCTTGT 1322 Score = 104 bits (114), Expect = 6e-17 Identities = 110/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| |||||||| |||||||| ||| || ||| ||| | | || ||||| Sbjct 1420 AAAGCTAAA-ATTCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATATTCGC 1478 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || |||||||||||||||||| | ||| || | || |||||| ||||||||||||| || Sbjct 1479 TGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCAAC 1538 Query 206367 TCTTCACCTTGTTTTGAGACTTCG 206390 | || |||||| || | || || Sbjct 1539 CTTACATCTTGTTCTGCGCCTACG 1562 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| || ||||| ||||||||||||| || ||||||| || ||| | |||||||||| Sbjct 1322 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 1263 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||| || ||||| || | |||||||| Sbjct 1262 AACTGCTTACCAGCGAATATCAAACGTTGTTG 1231 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | || |||||| || | || ||||||||||||| || ||||||| || ||| Sbjct 1562 CGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA 1503 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||||||||| |||||| || ||||| || | |||||||| Sbjct 1502 CGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTG 1459 >seq52 Length=730220 Score = 104 bits (114), Expect = 6e-17 Identities = 110/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| |||||||| |||||||| ||| || ||| ||| | | || ||||| Sbjct 729586 AAAGCTAAA-ATTCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATATTCGC 729644 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || |||||||||||||||||| | ||| || | || |||||| ||||||||||||| || Sbjct 729645 TGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCAAC 729704 Query 206367 TCTTCACCTTGTTTTGAGACTTCG 206390 | || |||||| || | || || Sbjct 729705 CTTACATCTTGTTCTGCGCCTACG 729728 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | || |||||| || | || ||||||||||||| || ||||||| || ||| Sbjct 729728 CGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA 729669 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||||||||| |||||| || ||||| || | |||||||| Sbjct 729668 CGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTG 729625 >seq523 Length=224339 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || |||||||| || || | ||||| || | |||| Sbjct 140251 CAGATTTTTGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCTGAT 140192 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| |||| ||| || |||||||| |||||||| || || ||| ||| Sbjct 140191 ACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAACAA 140132 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || || || ||||||||||| | ||| | |||| || || | Sbjct 140131 CGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAATATA 140072 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || ||||| ||||| Sbjct 140071 CAGAAGGAATCAACACTTCATCTTGT 140046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181369051215114