Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1104 113 4e-20 seq2294 107 2e-18 seq26094 104 2e-17 seq523 96.9 3e-15 seq52 95.1 1e-14 >seq1104 Length=79538 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | |||||||| || || ||||| || || ||||| | Sbjct 62165 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA 62106 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| |||||||||||||| || || || ||||||||| Sbjct 62105 TCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTA 62046 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||| | || | || || |||| || ||||| | || | | Sbjct 62045 TCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATC 61986 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| || || | ||||||||||| Sbjct 61985 GTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61951 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | |||||||| || || ||||| || || ||||| | Sbjct 62393 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA 62334 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| |||||||||||||| || || || ||||||||| Sbjct 62333 TCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTA 62274 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||| | || | || || |||| || ||||| | || | | Sbjct 62273 TCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATC 62214 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| || || | ||||||||||| Sbjct 62213 GTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 62179 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | |||||||| || || ||||| || || ||||| | Sbjct 61709 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA 61650 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| |||||||||||||| || || || ||||||||| Sbjct 61649 TCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTA 61590 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || || |||| || ||||| | || | | Sbjct 61589 TCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATC 61530 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| || || | ||||||||||| Sbjct 61529 GTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | |||||||| || || ||||| || || ||||| | Sbjct 61937 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA 61878 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| |||||||||||||| || || || ||||||||| Sbjct 61877 TCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTA 61818 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || || |||| || ||||| | || | | Sbjct 61817 TCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATC 61758 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| || || | ||||||||||| Sbjct 61757 GTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61723 >seq2294 Length=11734 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||| ||| | ||||| | |||||||||| || ||||||||||| || || Sbjct 1563 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 1504 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| | ||| ||||| | | || | ||| ||||| || ||||| || || Sbjct 1503 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 1444 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || |||||| ||||| | || | |||||| | ||||| || || | Sbjct 1443 TTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAA 1384 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| ||||||| || || || | || || ||||| Sbjct 1383 CGGAATCGTCTTACCAGGCAACGTCTTCACAAAGATTTGCAT 1342 >seq26094 Length=224 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | |||||||| || || ||||| || || ||||| | Sbjct 215 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA 156 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| |||||||| || || || || || ||||||||| Sbjct 155 TCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTTA 96 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||| | || | || || |||| || ||||| | || | | Sbjct 95 TCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATC 36 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| || || | ||||||||||| Sbjct 35 GTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq523 Length=224339 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || || || || || |||||| | || || |||||| || ||||| || | Sbjct 140059 TTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAG 140118 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | |||||||| ||||| ||||| || |||||||||||||| | | |||| | | | Sbjct 140119 CAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATC-TTGAATTTTCGCCTTA 140177 Query 132048 ACTG-TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 |||| ||| | ||||| | ||||| ||||| | || | ||||| || || || || Sbjct 140178 ACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCCCGTAAGTGTC 140237 Query 132107 TTTATGAAAATCTGCAT 132123 || | ||||||||||| Sbjct 140238 TTCACAAAAATCTGCAT 140254 >seq52 Length=730220 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||| ||| | ||||| | |||||||||| || ||||||||||| || || Sbjct 729729 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 729670 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| | ||| ||||| | | || | ||| ||||| || ||||| || || Sbjct 729669 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 729610 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTC 132078 |||||| || |||||| ||||| | || | |||||| | ||||| || || Sbjct 729609 TTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTC 729553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476433459768240