Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq26094 93.3 4e-14 seq1104 93.3 4e-14 >seq26094 Length=224 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| || || ||| ||||||| | ||||||||| | | Sbjct 1 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 60 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || || ||| |||||||| || || || ||||| ||| Sbjct 61 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCCGACCAG 120 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || | || || | | || || || || ||||||| | | | |||| | |||||| Sbjct 121 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTG--ATTACA 178 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| || ||||| ||||| |||| || ||||| Sbjct 179 ATATCCAGAAAGAGTCCACTCTTCACTTGGTGTT 212 >seq1104 Length=79538 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| || || ||| ||||||| | ||||||||| | | Sbjct 61951 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62010 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || || ||| |||||||| || || || |||||||| Sbjct 62011 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAA 62070 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || | || || | | || || || || ||||||| | | | |||| | |||||| Sbjct 62071 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTG--ATTACA 62128 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| || ||||| ||||| |||| || ||||| Sbjct 62129 ATATCCAGAAAGAGTCCACTCTTCACTTGGTGTT 62162 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| || || ||| ||||||| | ||||||||| | | Sbjct 62179 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62238 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || || ||| |||||||| || || || |||||||| Sbjct 62239 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAA 62298 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || | || || | | || || || || ||||||| | | | |||| | |||||| Sbjct 62299 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTG--ATTACA 62356 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| || ||||| ||||| |||| || ||||| Sbjct 62357 ATATCCAGAAAGAGTCCACTCTTCACTTGGTGTT 62390 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| || || ||| ||||||| | ||||||||| | | Sbjct 61495 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61554 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || || || |||||||| || || || |||||||| Sbjct 61555 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAA 61614 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || | || || | | || || || || ||||||| | | | |||| | |||||| Sbjct 61615 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTG--ATTACA 61672 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| || ||||| ||||| |||| || ||||| Sbjct 61673 ATATCCAGAAAGAGTCCACTCTTCACTTGGTGTT 61706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| || || ||| ||||||| | ||||||||| | | Sbjct 61723 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61782 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || || || |||||||| || || || |||||||| Sbjct 61783 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAA 61842 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || | || || | | || || || || ||||||| | | | |||| | |||||| Sbjct 61843 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTG--ATTACA 61900 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| || ||||| ||||| |||| || ||||| Sbjct 61901 ATATCCAGAAAGAGTCCACTCTTCACTTGGTGTT 61934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444928413170880