Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1010 176 6e-39 seq7458 95.1 2e-14 seq3397 93.3 6e-14 >seq1010 Length=92424 Score = 176 bits (194), Expect = 6e-39 Identities = 352/515 (68%), Gaps = 9/515 (2%) Strand=Plus/Plus Query 39449 CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 39508 || ||||| | |||||| ||||| ||||| || ||||||||||| || | | Sbjct 82102 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 82161 Query 39509 ACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGAT 39568 ||||||||||| || | || |||||||| ||| || || |||||| ||||||| || Sbjct 82162 ACTGGTAGAGCTTCTGATAAAAACTCTTGTTCTATTAGAACCGCCTCTCTTATTATTGAC 82221 Query 39569 GTTACTACCTCATCACTCGG-TGGATGCAATAA-ATGTTTAAACATTAAGCAGGCGAAGT 39626 || || || || | || |||| ||||||||| | || || ||||| | Sbjct 82222 TCGACACGTTCTTCCGAAGGCTTTTTG--ATAATATGTTTAAATAATAGACAAGCGAAAT 82279 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||||||||| || || |||||||| |||||||| || ||| | ||||||||||| | Sbjct 82280 CACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAA 82339 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 |||| || || || ||||| ||||| || || || |||||||| || | ||||| | Sbjct 82340 GACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCA 82399 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCT 39803 |||||||||| |||| | | ||| | || | | | || | ||||| | Sbjct 82400 CTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTA 82459 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC-TATAGCATTAAAGAGATAA 39862 |||||| | ||| || || ||||||| | ||| | ||| || || |||||| | Sbjct 82460 ATGCCCACTGAGCCTTTTTTGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAG 82518 Query 39863 TGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGG 39922 | |||| | ||||| | |||||||| ||||| | | |||||||| || || Sbjct 82519 TCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGA 82578 Query 39923 ATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957 || || || || || ||||| | ||| ||||| || Sbjct 82579 ATATTCTCGATAGCTATCTGCATTCCATAAAAGCA 82613 >seq7458 Length=1001 Score = 95.1 bits (104), Expect = 2e-14 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 69814 GATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGA 69873 |||| ||||||||||||| || || | || ||| || ||| || | || Sbjct 1 GATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTATGAACATTTATT 60 Query 69874 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCC 69933 || || || || || ||||||| || | ||||| |||||| || || || || || Sbjct 61 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 120 Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTT 69993 ||||| ||||| ||| |||| | | ||||||||| || || | || | | |||| Sbjct 121 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGGAGTT 180 Query 69994 CCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTAT 70053 || || ||||| | ||| || || || || || |||||||||||||| | ||| || || Sbjct 181 CCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTATAC 240 Query 70054 GT 70055 || Sbjct 241 GT 242 >seq3397 Length=2750 Score = 93.3 bits (102), Expect = 6e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || |||||||| || || || || || ||| ||||||| ||||||| || ||||| Sbjct 880 TACATTGTTTCAAATATACGTTTGTTAAGGTCTGCTGCTTCTGGACTATCAAAGGGATAC 821 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 |||||| ||||| ||||||||| || ||||||||||||||||| || | || | | Sbjct 820 CTCAAAAGACAAAATGTATCTGCCAAGCCTTGAACCCCAATACCGATCGGCCGGTGACGC 761 Query 69136 TTATTTGAACT 69146 ||||||| || Sbjct 760 ATATTTGATCT 750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686652634535760