Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1010 167 2e-36 seq40 152 4e-32 seq165 89.7 4e-13 >seq1010 Length=92424 Score = 167 bits (184), Expect = 2e-36 Identities = 596/931 (64%), Gaps = 52/931 (6%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 || ||| | || || || ||||||| || | ||||| | || || || || || Sbjct 82853 TTCGTCCTTTTCCCCATAGAATATCACGATGTCTGGCATTTTTATAAGAAGGCTGTAGCT 82794 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || |||||||| | ||||| || |||||| | ||||| | ||||||| | | Sbjct 82793 TCTTTTTGGACTGTGGAAGAGGTGGATTTGTCCAAAGATCTCATACATTGGGAGTCGCTC 82734 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || ||| ||||| ||||| | || || || || ||||| ||||| ||||| Sbjct 82733 AAGGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCTTTCTTTGCGGCGAGTGACGGA 82674 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939 || || || || | | || || || ||||| || | ||||| | || Sbjct 82673 ATTGTACTCGAGAACCTCCTAGAACGCTTCAGCCAGGAAGTCCAGATCCCAGAGGTTCGT 82614 Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 || |||||||| | || || || || || |||||||| || ||||||||| | | | Sbjct 82613 TGCTTTTATGGAATGCAGATAGCTATCGAGAATATTCACTCTGAAATGTACTCTTTATTA 82554 Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATA-GAAAC 44058 || ||||| ||||||||||| | || | | | | || || || ||| | ||| Sbjct 82553 ATTGATACATACATCAAAGACTCCAAAGAAAGGGACTTTCTCTTCAACGCCATAAGCAAC 82494 Query 44059 AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATGA 44115 || || | | || | || || | ||||| | | ||||| | |||| || Sbjct 82493 TTAACTTGTGTTGCAAAA-AAGGCTCAGTGGGCATTAGATTGGATTGGAGATTCCAAATC 82435 Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 | |||||| |||||| | | || ||||||| |||||||| |||| ||||| || Sbjct 82434 TACTTTTGCAGAACGTTTAATTGCTTTTGCAGCAGTGGAAGGTGTTTTTTTTTCTGGTAG 82375 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 || || || ||||| ||| | |||||||||||| | |||||||| || | ||| || Sbjct 82374 CTTCGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGCAA 82315 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATA 44295 ||| ||||| ||| | || ||||| ||||||| ||||| ||||| | ||| || | | Sbjct 82314 TGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTATTATTTAAACA 82255 Query 44296 TCTAGGAGACGATAAGCCTTCATGTAAG-ACAATTACAG-ATATTGTTGTAGAGGCAGTA 44353 | | | | |||||||| | ||| || | || || | |||||| || Sbjct 82254 TAT---TATCAAAAAGCCTTC--GGAAGAACGTGTCGAGTCAATAATAAGAGAGGCGGTT 82200 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT--- 44410 ||||||||||| ||| | || ||| |||| || | ||||| ||||||||| Sbjct 82199 CTAATAGAACAAGAGTTTTTATCAGAAGCTCTACCAGTCAGCTTAATTGGAATGAATTGC 82140 Query 44411 GAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGT 44470 ||| ||||| || || ||||||| || ||||| | |||| | ||||| ||| Sbjct 82139 AAAC---TGATGTGTCAGTACATTGAATTTATCGCAGACAGGCTACTAGTTGAACTTGGT 82083 Query 44471 TGCGATAA-------ACACTATATTGTA---------------------------CAAAA 44496 | || || | | | | || || | || Sbjct 82082 TATGAAAAGGTTTGTAAATTTTCTTTTAATCGTTTTCGTTTAGATGTATCATTCTGACAA 82023 Query 44497 CCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACG 44556 || ||||| |||||||||||||| ||| | ||||| || |||||||||||||| || || Sbjct 82022 TCCTTTTGACTTTATGGAAAATATATCGATCGAAGGAAAGACAAACTTTTTTGAGAAGCG 81963 Query 44557 CGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 ||||| |||||||| || || |||||| Sbjct 81962 AGTTGGTGAATATCAACGTGCTGGTGTCATG 81932 >seq40 Length=808671 Score = 152 bits (168), Expect = 4e-32 Identities = 191/258 (74%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 |||||||| ||||| || |||| ||||| ||||| ||| ||| |||||| |||| || Sbjct 18645 AAACATGTCCGTGGTATTCTGCTATATGGTCCACCTGGTACTGGTAAAACACTAATGGCA 18704 Query 19396 AGAGAACTTAGTAAATTACTTACAAAAC---AACCTCCCAAAATTGTAAATGGTCCTGAA 19452 || || || ||||| | |||| || ||||| |||||||| |||||||| Sbjct 18705 CGACAAATTGGTAAAATGCTTAATGCACGTGAACCT---AAAATTGTCAATGGTCCAAGT 18761 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || ||| |||||||||| ||| |||| |||| |||| | || || || ||||| ||| Sbjct 18762 ATATTAGATAAATATGTCGGTGAATCTGAAGCAAATATCCGTAAATTATTCGCTGATGCT 18821 Query 19513 GAAGAAGAACAAAAACGTTTAGGGCGCAAAA-GTTCTTTGCACATTATAATACTAGATGA 19571 ||||||||| ||||||| | ||| |||||| | | ||||| ||||| ||| | ||||| Sbjct 18822 GAAGAAGAAGAAAAACGCAT-GGGTGCAAAATCTGCATTGCATATTATTATATTTGATGA 18880 Query 19572 ATTGGACGCAATCTGTAA 19589 | | || || || ||||| Sbjct 18881 AATTGATGCCATTTGTAA 18898 >seq165 Length=488026 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 41138 GGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACA 41197 ||| || || || ||||| || || || ||||||||| | | || ||||||||||| || Sbjct 487790 GGGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTATTAACATATATGATTGCTCA 487731 Query 41198 CGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTA 41254 |||| ||||||||||||||| || |||||||| | || |||| |||||||| Sbjct 487730 TATTACTGGTTTAAAACCTGGTGAGTTCGTTCACACAATTGGCGATGCGCATATTTA 487674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397311484253170