Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1104 96.9 3e-15 seq523 86.0 5e-12 >seq1104 Length=79538 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || || ||||| || |||||||| || || | || | Sbjct 61937 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA 61878 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | || |||||||||||||| || || | || |||||| Sbjct 61877 TCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTA 61818 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| |||| | || | ||||| | | ||| ||||| | ||| || Sbjct 61817 TCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATC 61758 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || |||| || |||||||| || |||||| Sbjct 61757 GTTTTACCAGTCAATGTCTTCACAAAAATCTGCATA 61722 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||| ||||| || | || || ||||| || |||||||| || | Sbjct 62405 CCTCCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGAC 62346 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| ||||| || || || | || |||||||||||||| || || Sbjct 62345 AATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGG 62286 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||||| |||| | || | ||||| | | ||| ||| Sbjct 62285 ATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACT 62226 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | ||| || |||| || |||||||| || |||||| Sbjct 62225 TCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCATA 62178 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || || ||||| || |||||||| || || | || | Sbjct 61709 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA 61650 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | || |||||||||||||| || || | || |||||| Sbjct 61649 TCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTA 61590 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| |||| | || | ||||| | | ||| ||||| | ||| || Sbjct 61589 TCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATC 61530 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| || |||||||| || ||||| Sbjct 61529 GTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || || ||||| || |||||||| || || | || | Sbjct 62165 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA 62106 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | || |||||||||||||| || || | || |||||| Sbjct 62105 TCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTA 62046 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||| |||| | || | ||||| | | ||| ||||| | ||| || Sbjct 62045 TCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATC 61986 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || |||| || |||||||| || |||||| Sbjct 61985 GTTTTACCAGTCAATGTCTTCACAAAAATCTGCATA 61950 >seq523 Length=224339 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||||| |||||| | | || | ||||| || ||||| || Sbjct 140058 GTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCA 140117 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| ||||| ||||| || || || | || |||||||| || || || Sbjct 140118 GCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGAATTTTCGCCTTA 140177 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | ||||| || || | | ||||||||||| ||||||| ||| ||||| || || Sbjct 140178 ACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCCCGTAAGTGTC 140237 Query 27231 TTCACAAAGATTTGCAT 27247 |||||||| || ||||| Sbjct 140238 TTCACAAAAATCTGCAT 140254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424779893055408