Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1104 131 1e-25 seq2294 118 9e-22 seq523 113 4e-20 seq52 111 1e-19 >seq1104 Length=79538 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || || | || ||| | ||||| |||||| Sbjct 61951 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62010 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || |||||||| |||||||| || |||||||||||| Sbjct 62011 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAA 62070 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || ||||||| || || | || |||||||| Sbjct 62071 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 62130 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || ||||| |||||| | || ||||| || Sbjct 62131 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGTAT 62180 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || || | || ||| | ||||| |||||| Sbjct 61495 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61554 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || ||||| |||||||| || |||||||||||| Sbjct 61555 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAA 61614 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || ||||||| || || | || |||||||| Sbjct 61615 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 61674 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || ||||| |||||| | || ||||| || Sbjct 61675 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGTAT 61724 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || || | || ||| | ||||| |||||| Sbjct 61723 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61782 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || ||||| |||||||| || |||||||||||| Sbjct 61783 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAA 61842 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || ||||||| || || | || |||||||| Sbjct 61843 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 61902 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || ||||| |||||| | || ||||| || Sbjct 61903 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGTAT 61952 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || || | || ||| | ||||| |||||| Sbjct 62179 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62238 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || |||||||| |||||||| || |||||||||||| Sbjct 62239 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAA 62298 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || ||||||| || || | || |||||||| Sbjct 62299 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 62358 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || ||||| || | || ||||| |||||| | || || || Sbjct 62359 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGAGG 62405 >seq2294 Length=11734 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || | || ||| | ||| | | || || || || Sbjct 1342 ATGCAAATCTTTGTGAAGACGTTGCCTGGTAAGACGATTCCGTTAGAGGTTGAGCCTAGT 1401 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| |||||||||||||||||||| || || || || ||| Sbjct 1402 GATACTATTGAGAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 1461 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| |||| ||| || || || |||||||| | || | || || |||||| Sbjct 1462 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 1521 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||||||||| | ||| |||| | || || ||||| Sbjct 1522 ATCCAGAAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGGCAT 1571 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 ||||||| || ||| |||||||||||||||||||| || || || || ||||| ||| Sbjct 1180 ATTGAGAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGT 1239 Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173 || |||| ||| || || || |||||||| | || | || || |||||||| || Sbjct 1240 TTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAG 1299 Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| | ||| | || | ||| | || ||||| || Sbjct 1300 AAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 1343 >seq523 Length=224339 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || || |||| || || ||||| || || | Sbjct 140254 ATGCAGATTTTTGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 140195 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || || ||||||||||| ||||||||||| ||||| || ||| Sbjct 140194 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 140135 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| |||| | || ||||||||| ||||||| | || ||||||| || || Sbjct 140134 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 140075 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 || || ||||| || || | ||| | || | ||| | || ||||| |||| Sbjct 140074 ATACAGAAGGAATCAACACTTCATCTTGTCCTCCGTCTTCGTGGTGGTATAA 140023 >seq52 Length=730220 Score = 111 bits (122), Expect = 1e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 ||||||| || ||| |||||||||||||||||||| || || || || ||||| ||| Sbjct 729574 ATTGAGAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGT 729633 Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173 || |||| ||| || || || |||||||| | || | || || |||||||| || Sbjct 729634 TTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAG 729693 Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||||||| | ||| |||| | || || ||||| Sbjct 729694 AAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGGCAT 729737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434756208055680