Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_028962.1 Length=140961 Score E Sequences producing significant alignments: (Bits) Value seq3308 188 6e-43 >seq3308 Length=2910 Score = 188 bits (208), Expect = 6e-43 Identities = 316/454 (70%), Gaps = 5/454 (1%) Strand=Plus/Minus Query 116789 AAATGACAATAAAAGAATTTTTACAAAGACAAGAAGAAAGCACAGTAAAAGACGTAGCAA 116848 |||| |||||| ||| |||||||||| ||||||||| ||||||||| || |||||||||| Sbjct 1697 AAAT-ACAATACAAGCATTTTTACAAGGACAAGAAGCAAGCACAGTTAAGGACGTAGCAA 1639 Query 116849 ATTACGGAGTACAGTCAGGAGCAATAGGAGAACTTATTTACACAAAAGATGTAGTTAAAT 116908 | | |||||||| |||||||| || || | || |||||| ||| |||| || | Sbjct 1638 CTCATGGAGTACAAAGCGGAGCAATTGGCAAATTAATCTACACATCAGACATAGTAAACT 1579 Query 116909 TTTTTGATAACTACAGACAAGATATTGAAACTGTAGTTATAGATTACTTAGAAAGCGTAA 116968 | ||||||| ||| || || |||||| | || | | || ||| | ||| || | Sbjct 1578 TCTTTGATAGATACGAGCAGGACATTGAAGCCGTCATCACTGAATACATTGAAGAGGTTA 1519 Query 116969 CAGGTGTTAAATATTTTAACTTACTAAATTACGAACTAATGAACGACTTAGAAAATTATG 117028 | || |||||| | ||||| | || || || || |||| ||| | || ||||||| Sbjct 1518 CGGGACAACAATATTATGACTTATTGAACTATGAGCTTATGAGAGACCTCGAGAATTATG 1459 Query 117029 TAAATGTTGAGTTTCAACATGAAGACACTTACATTGAAATGGAGTACCAAAAAGCTGAAG 117088 |||||| || ||| || | |||||| || | | | || | | | ||| ||| Sbjct 1458 CAAATGTAGAATTTGAAGACGAAGACGAATATAATAACATTCAATTTGACCTAGCAGAAA 1399 Query 117089 AAATTGCAA--GAAGAGACATTGAAAATTTTGAAGATATGACAGAAGATGAACAAGACGA 117146 | ||||| || ||| ||||| |||||||| ||| |||| || || | || Sbjct 1398 ACATTGCTTCTGATGAGG--TTGAAGGATTTGAAGACATGGACGAAGCAGACCAGGCGGA 1341 Query 117147 AGCTATTACTGAATGTTTAGACCTTGTAGAATTAGACTTACAAGACACAGACAAAGTGCA 117206 ||| || ||| | | || ||| |||||||| ||||||| || ||||| || || Sbjct 1340 AGCAATCTATGAGGCTATGGATGATGTTGAATTAGAACTACAAGAAACGGACAAGGTTCA 1281 Query 117207 GTTTGTTAACTTAGCTGTTGAGATTGTAGCACAA 117240 | |||||| |||| |||||||||||||| ||| Sbjct 1280 ATATGTTAATCTAGCGGTTGAGATTGTAGCGCAA 1247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450779030515440