Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq26094 143 6e-29 seq1104 143 6e-29 seq2294 129 1e-24 seq523 125 2e-23 seq52 114 3e-20 >seq26094 Length=224 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || | |||||||||||||||||| ||||| || ||||| | | || Sbjct 222 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 163 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||||||||| || || ||||| || || || ||||| || |||| ||| Sbjct 162 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCC 103 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || || ||||| ||||| || || ||||||||| ||| || || | Sbjct 102 TTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 43 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| || || || | ||||| ||||| | |||||| Sbjct 42 AGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq1104 Length=79538 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || | |||||||||||||||||| ||||| || ||||| | | || Sbjct 61716 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 61657 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||||||||| || || ||||| || || ||||| || || || | ||| Sbjct 61656 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCC 61597 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || |||||||| ||||| || || ||||||||| ||| || || | Sbjct 61596 TTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 61537 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| || || || | ||||| ||||| | |||||| Sbjct 61536 AGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || | |||||||||||||||||| ||||| || ||||| | | || Sbjct 61944 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 61885 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||||||||| || || ||||| || || ||||| || || || | ||| Sbjct 61884 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCC 61825 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || |||||||| ||||| || || ||||||||| ||| || || | Sbjct 61824 TTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 61765 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| || || || | ||||| ||||| | |||||| Sbjct 61764 AGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61723 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || | |||||||||||||||||| ||||| || ||||| | | || Sbjct 62172 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 62113 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||||||||| || || ||||| || || ||||| || || || | ||| Sbjct 62112 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCC 62053 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || || ||||| ||||| || || ||||||||| ||| || || | Sbjct 62052 TTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 61993 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| || || || | ||||| ||||| | |||||| Sbjct 61992 AGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61951 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | | || | |||||||||||||||||| ||||| || ||||| | | Sbjct 62403 TCCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAA 62344 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||||||||||||||| || || ||||| || || ||||| || || || | Sbjct 62343 TGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGAT 62284 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||| || || || ||||| ||||| || || ||||||||| ||| || || Sbjct 62283 TCCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTC 62224 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||||||| || || || | ||||| ||||| | |||||| Sbjct 62223 CAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 62179 >seq2294 Length=11734 Score = 129 bits (142), Expect = 1e-24 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || ||||| || | || |||||||| |||||||| || || | || Sbjct 1566 TCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAG 1507 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||||||||| |||||| || ||||| || | ||||||||||||||||||| Sbjct 1506 AGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAAT 1447 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||| ||||| || || || |||||| || || || || ||| |||||||| Sbjct 1446 ACCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTC 1387 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | | |||||||| || | | ||||| ||||| | |||||| Sbjct 1386 TAACGGAATCGTCTTACCAGGCAACGTCTTCACAAAGATTTGCATT 1341 Score = 127 bits (140), Expect = 5e-24 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| |||||||| |||||||| || || | || || | ||||||| Sbjct 1325 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 1266 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || ||||| || | ||||||||||||||||||| ||||| ||||| Sbjct 1265 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 1206 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 || || || |||||| || || || || ||| Sbjct 1205 TGAATTTTAGCTTTCACATTCTCAATAGTATCA 1173 >seq523 Length=224339 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||||||| ||||| || || || || || || ||||| || | ||| || Sbjct 140033 ACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGT 140092 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| || ||||| || || || || ||||||||||| || || | || Sbjct 140093 TCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCC 140152 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || || || || || || ||| || || |||| ||||| || || Sbjct 140153 TTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAG 140212 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || ||||| ||||| | |||||| Sbjct 140213 GGTTATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 140254 >seq52 Length=730220 Score = 114 bits (126), Expect = 3e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || ||||| || | || |||||||| |||||||| || || | || Sbjct 729732 TCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAG 729673 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||||||||| |||||| || ||||| || | ||||||||||||||||||| Sbjct 729672 AGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAAT 729613 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 ||||| ||||| || || || |||||| || || || || ||| Sbjct 729612 ACCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCA 729567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158708916321410