Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq523 93.3 4e-14 seq26094 86.0 5e-12 >seq523 Length=224339 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || ||||||||||| |||| ||| |||||| | || || || |||||||| ||||| Sbjct 140064 TCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAA 140123 Query 39154 ATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || ||||| || ||||| |||||| | || ||||| || |||||| || | | Sbjct 140124 ATTAGACGTTGTTGGTCTGGTGGG-ATGCCTTCTTTATCTTGAATTTTCGCCTTAACTGC 140182 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | ||||| | ||| || || | || ||| |||||||||| || || || || Sbjct 140183 TTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCAC 140242 Query 39273 AAAGATTTGCATC 39285 ||| || |||||| Sbjct 140243 AAAAATCTGCATC 140255 >seq26094 Length=224 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || ||| |||||| || ||||| ||||| | | ||| || | Sbjct 215 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA 156 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| || || ||||| || |||||||||||||||| || | | ||||| Sbjct 155 TCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTTA 96 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || || || || | || | | || || |||| || || |||| ||||| Sbjct 95 TCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATC 36 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || |||| || || ||||| || ||||| Sbjct 35 GTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429389416414442