Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq523 120 2e-22 seq1104 107 1e-18 seq26094 98.7 7e-16 seq2294 96.9 2e-15 seq52 89.7 3e-13 >seq523 Length=224339 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || ||||||||||| || || || |||||||| | | Sbjct 140254 ATGCAGATTTTTGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 140195 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | ||| | | || |||||| || |||||||| | || ||||| ||| Sbjct 140194 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 140135 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| |||| ||||| ||||||||||||||||| | ||| ||| | ||| || || Sbjct 140134 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 140075 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 ||||| || || || ||| | ||| Sbjct 140074 ATACAGAAGGAATCAACACTTCAT 140051 >seq1104 Length=79538 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || || |||||||||||| | ||||| || | | Sbjct 61951 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62010 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || ||| || |||||||| | || || ||||| Sbjct 62011 GACACCATTGAGAATGTGAAGGC-TAAGATTCAAGATAAAGAAGGAATCCCACCCGATCA 62069 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| || || || |||||||| | || || || |||||||| Sbjct 62070 ACAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAA 62129 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 62130 TATCCAGAAAGAGTCCAC 62147 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || || |||||||||||| | ||||| || | | Sbjct 62179 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62238 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || ||| || |||||||| | || || ||||| Sbjct 62239 GACACCATTGAGAATGTGAAGGC-TAAGATTCAAGATAAAGAAGGAATCCCACCCGATCA 62297 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| || || || |||||||| | || || || |||||||| Sbjct 62298 ACAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAA 62357 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 62358 TATCCAGAAAGAGTCCAC 62375 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || || |||||||||||| | ||||| || | | Sbjct 61495 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61554 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | || |||||||| | || || ||||| Sbjct 61555 GACACCATTGAGAATGTGAAGGCTAAGA-TCCAAGATAAAGAAGGAATCCCACCCGATCA 61613 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| || || || |||||||| | || || || |||||||| Sbjct 61614 ACAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAA 61673 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 61674 TATCCAGAAAGAGTCCAC 61691 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || || |||||||||||| | ||||| || | | Sbjct 61723 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61782 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | || |||||||| | || || ||||| Sbjct 61783 GACACCATTGAGAATGTGAAGGCTAAGA-TCCAAGATAAAGAAGGAATCCCACCCGATCA 61841 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| || || || |||||||| | || || || |||||||| Sbjct 61842 ACAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAA 61901 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 61902 TATCCAGAAAGAGTCCAC 61919 >seq26094 Length=224 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || || |||||||||||| | ||||| || | | Sbjct 1 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 60 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || ||| || |||||||| | || || || || Sbjct 61 GACACCATTGAGAATGTGAAGGC-TAAGATTCAAGATAAAGAAGGAATTCCACCCGACCA 119 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || |||||||| | || || || |||||||| Sbjct 120 GCAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAA 179 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 180 TATCCAGAAAGAGTCCAC 197 >seq2294 Length=11734 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | | || || ||||| | | || ||||| | | Sbjct 1341 AATGCAAATCTTTGTGAAGACGTTGCCTGGTAAGACGATTCCGTTAGAGGTTGAGCCTAG 1400 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | |||| || |||||||||||| | || || || | Sbjct 1401 TGATACTATTGAGAATGTGAAAGCTAAAA-TTCAAGACAAAGAAGGTATTCCTCCTGACC 1459 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| ||||| || || || || ||||||| | ||| ||| | || |||| Sbjct 1460 AACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 1519 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| || |||||||| || |||||| | ||| Sbjct 1520 ACATCCAGAAAGAGTCAACCTTACATCTTGTT 1551 >seq52 Length=730220 Score = 89.7 bits (98), Expect = 3e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | |||| || |||||||||||| | || || || || Sbjct 729568 GATACTATTGAGAATGTGAAAGCTAAAA-TTCAAGACAAAGAAGGTATTCCTCCTGACCA 729626 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| ||||| || || || || ||||||| | ||| ||| | || ||||| Sbjct 729627 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 729686 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || |||||||| || |||||| | ||| Sbjct 729687 CATCCAGAAAGAGTCAACCTTACATCTTGTT 729717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337886699075672