Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1104 159 8e-34 seq26094 158 3e-33 seq2294 127 5e-24 seq523 109 1e-18 seq52 109 1e-18 seq637 84.2 5e-11 >seq1104 Length=79538 Score = 159 bits (176), Expect = 8e-34 Identities = 173/227 (76%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 225474 CTGAAATAAAAT-ATTCTA-ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGG 225531 |||||||||||| | || |||||| | || || | ||| |||||||| ||||| ||| Sbjct 62420 CTGAAATAAAATTAACCTCCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGG 62361 Query 225532 ACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGT 225591 | ||||||||| | ||| || | |||||||| |||||||||||||| ||||| || || Sbjct 62360 ATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGC 62301 Query 225592 TGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTG 225651 ||||| ||||| || || ||||| || ||||| ||||| ||||||| || |||||| Sbjct 62300 TGTTGATCGGGTGGGATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTG 62241 Query 225652 TCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || | ||| || || || |||||||| || || ||||| || || Sbjct 62240 TCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTT 62194 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| |||||||| ||||| |||| ||||||||| | ||| || Sbjct 61716 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 61657 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||||||||| ||||| || || ||||| ||||| || || || Sbjct 61656 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCC 61597 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || ||||||||||| ||||||| || |||||||| | ||| || || || Sbjct 61596 TTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 61537 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||||| || || ||||| || || Sbjct 61536 AGTGATCGTTTTACCAGTCAATGTCTT 61510 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| |||||||| ||||| |||| ||||||||| | ||| || Sbjct 61944 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 61885 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||||||||| ||||| || || ||||| ||||| || || || Sbjct 61884 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCC 61825 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || ||||||||||| ||||||| || |||||||| | ||| || || || Sbjct 61824 TTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 61765 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||||| || || ||||| || || Sbjct 61764 AGTGATCGTTTTACCAGTCAATGTCTT 61738 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| |||||||| ||||| |||| ||||||||| | ||| || Sbjct 62172 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 62113 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||||||||| ||||| || || ||||| ||||| || || || Sbjct 62112 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCC 62053 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || ||||| ||||| ||||||| || |||||||| | ||| || || || Sbjct 62052 TTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 61993 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||||| || || ||||| || || Sbjct 61992 AGTGATCGTTTTACCAGTCAATGTCTT 61966 >seq26094 Length=224 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| |||||||| ||||| |||| ||||||||| | ||| || Sbjct 222 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 163 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||||||||| ||||| || || || |||||||| ||||| || Sbjct 162 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCC 103 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || ||||| ||||| ||||||| || |||||||| | ||| || || || Sbjct 102 TTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 43 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||||| || || ||||| || || Sbjct 42 AGTGATCGTTTTACCAGTCAATGTCTT 16 >seq2294 Length=11734 Score = 127 bits (140), Expect = 5e-24 Identities = 164/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| ||||| || | || || ||||| |||| ||||| || | || ||| Sbjct 1563 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 1504 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| |||||||| || | ||||||||||| || |||||||| Sbjct 1503 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 1444 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| |||||||| || ||| || |||||| || || || || | || || |||| Sbjct 1443 TTCTTTGTCTTGAAT-TTTAGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTA 1385 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| |||||||| || | ||| || || | || | ||||||| Sbjct 1384 ACGGAATCGTCTTACCAGGCAACGTCTTCACAAAGATTTGCATT 1341 Score = 118 bits (130), Expect = 3e-21 Identities = 111/139 (80%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || ||||| || ||||| |||| ||||| || | || ||| | |||||| Sbjct 1325 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 1266 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| |||||||| || | ||||||||||| || ||||||||||| |||||| Sbjct 1265 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 1206 Query 225622 TGGATCTTTTGC-TTCACA 225639 || || ||| || |||||| Sbjct 1205 TGAAT-TTTAGCTTTCACA 1188 >seq523 Length=224339 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||||| || || || ||||| || || | ||| || |||| | ||| Sbjct 140033 ACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGT 140092 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| || || || ||||| || || || ||||||||||| || || || || Sbjct 140093 TCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCC 140152 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || ||||| || || ||| || ||||| || || || | | || || |||| Sbjct 140153 TTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAG 140212 Query 225672 CGTGATCGTCTTGCCCGT 225689 || || || || ||||| Sbjct 140213 GGTTATAGTTTTTCCCGT 140230 >seq52 Length=730220 Score = 109 bits (120), Expect = 1e-18 Identities = 115/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| ||||| || | || || ||||| |||| ||||| || | || ||| Sbjct 729729 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 729670 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| |||||||| || | ||||||||||| || |||||||| Sbjct 729669 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 729610 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACA 225639 ||| |||||||| || ||| || |||||| Sbjct 729609 TTCTTTGTCTTGAAT-TTTAGCTTTCACA 729582 >seq637 Length=178306 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || |||||||| ||||||||||| || || || || || ||||| |||||||| Sbjct 67221 GAAAATCTGCCCATCAGTTATAGAGATAACGTTCGTTGGAATGTATGCAGATACATCACC 67162 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 || || || || | || || | |||||||||||| || || ||| Sbjct 67161 AGCCTGAGTCTCAATGACTGGAAGGGCTGTTAGTGAACCGCCTCCA 67116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192075357184796