Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06-
09] 29,834 sequences; 375,894,156 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1104 159 8e-34
seq26094 158 3e-33
seq2294 127 5e-24
seq523 109 1e-18
seq52 109 1e-18
seq637 84.2 5e-11
>seq1104
Length=79538
Score = 159 bits (176), Expect = 8e-34
Identities = 173/227 (76%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 225474 CTGAAATAAAAT-ATTCTA-ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGG 225531
|||||||||||| | || |||||| | || || | ||| |||||||| ||||| |||
Sbjct 62420 CTGAAATAAAATTAACCTCCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGG 62361
Query 225532 ACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGT 225591
| ||||||||| | ||| || | |||||||| |||||||||||||| ||||| || ||
Sbjct 62360 ATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGC 62301
Query 225592 TGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTG 225651
||||| ||||| || || ||||| || ||||| ||||| ||||||| || ||||||
Sbjct 62300 TGTTGATCGGGTGGGATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTG 62241
Query 225652 TCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698
|| | ||| || || || |||||||| || || ||||| || ||
Sbjct 62240 TCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTT 62194
Score = 158 bits (174), Expect = 3e-33
Identities = 159/207 (77%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| |||||||| ||||| |||| ||||||||| | ||| ||
Sbjct 61716 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 61657
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||||||||| ||||| || || ||||| ||||| || || ||
Sbjct 61656 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCC 61597
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||| || ||||||||||| ||||||| || |||||||| | ||| || || ||
Sbjct 61596 TTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 61537
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
|||||||| || || ||||| || ||
Sbjct 61536 AGTGATCGTTTTACCAGTCAATGTCTT 61510
Score = 158 bits (174), Expect = 3e-33
Identities = 159/207 (77%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| |||||||| ||||| |||| ||||||||| | ||| ||
Sbjct 61944 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 61885
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||||||||| ||||| || || ||||| ||||| || || ||
Sbjct 61884 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCC 61825
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||| || ||||||||||| ||||||| || |||||||| | ||| || || ||
Sbjct 61824 TTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 61765
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
|||||||| || || ||||| || ||
Sbjct 61764 AGTGATCGTTTTACCAGTCAATGTCTT 61738
Score = 152 bits (168), Expect = 1e-31
Identities = 158/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| |||||||| ||||| |||| ||||||||| | ||| ||
Sbjct 62172 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 62113
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||||||||| ||||| || || ||||| ||||| || || ||
Sbjct 62112 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCC 62053
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||| || ||||| ||||| ||||||| || |||||||| | ||| || || ||
Sbjct 62052 TTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 61993
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
|||||||| || || ||||| || ||
Sbjct 61992 AGTGATCGTTTTACCAGTCAATGTCTT 61966
>seq26094
Length=224
Score = 158 bits (174), Expect = 3e-33
Identities = 159/207 (77%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| |||||||| ||||| |||| ||||||||| | ||| ||
Sbjct 222 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 163
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||||||||| ||||| || || || |||||||| ||||| ||
Sbjct 162 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCC 103
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||| || ||||| ||||| ||||||| || |||||||| | ||| || || ||
Sbjct 102 TTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 43
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
|||||||| || || ||||| || ||
Sbjct 42 AGTGATCGTTTTACCAGTCAATGTCTT 16
>seq2294
Length=11734
Score = 127 bits (140), Expect = 5e-24
Identities = 164/224 (73%), Gaps = 2/224 (1%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| ||||| || | || || ||||| |||| ||||| || | || |||
Sbjct 1563 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 1504
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | |||||| |||||||| || | ||||||||||| || ||||||||
Sbjct 1503 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 1444
Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670
||| |||||||| || ||| || |||||| || || || || | || || ||||
Sbjct 1443 TTCTTTGTCTTGAAT-TTTAGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTA 1385
Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||| |||||||| || | ||| || || | || | |||||||
Sbjct 1384 ACGGAATCGTCTTACCAGGCAACGTCTTCACAAAGATTTGCATT 1341
Score = 118 bits (130), Expect = 3e-21
Identities = 111/139 (80%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||| || ||||| || ||||| |||| ||||| || | || ||| | ||||||
Sbjct 1325 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 1266
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| |||||||| || | ||||||||||| || ||||||||||| ||||||
Sbjct 1265 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 1206
Query 225622 TGGATCTTTTGC-TTCACA 225639
|| || ||| || ||||||
Sbjct 1205 TGAAT-TTTAGCTTTCACA 1188
>seq523
Length=224339
Score = 109 bits (120), Expect = 1e-18
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | |||||||| || || || ||||| || || | ||| || |||| | |||
Sbjct 140033 ACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGT 140092
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| |||||||| || || || ||||| || || || ||||||||||| || || || ||
Sbjct 140093 TCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCC 140152
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||| || ||||| || || ||| || ||||| || || || | | || || ||||
Sbjct 140153 TTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAG 140212
Query 225672 CGTGATCGTCTTGCCCGT 225689
|| || || || |||||
Sbjct 140213 GGTTATAGTTTTTCCCGT 140230
>seq52
Length=730220
Score = 109 bits (120), Expect = 1e-18
Identities = 115/149 (77%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| ||||| || | || || ||||| |||| ||||| || | || |||
Sbjct 729729 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 729670
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | |||||| |||||||| || | ||||||||||| || ||||||||
Sbjct 729669 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 729610
Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACA 225639
||| |||||||| || ||| || ||||||
Sbjct 729609 TTCTTTGTCTTGAAT-TTTAGCTTTCACA 729582
>seq637
Length=178306
Score = 84.2 bits (92), Expect = 5e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| || || |||||||| ||||||||||| || || || || || ||||| ||||||||
Sbjct 67221 GAAAATCTGCCCATCAGTTATAGAGATAACGTTCGTTGGAATGTATGCAGATACATCACC 67162
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575
|| || || || | || || | |||||||||||| || || |||
Sbjct 67161 AGCCTGAGTCTCAATGACTGGAAGGGCTGTTAGTGAACCGCCTCCA 67116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192075357184796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |