Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1010 248 7e-61 >seq1010 Length=92424 Score = 248 bits (274), Expect = 7e-61 Identities = 501/738 (68%), Gaps = 18/738 (2%) Strand=Plus/Plus Query 4382 GTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCAC 4441 ||| || | |||||| || ||||| | ||| |||| ||| || ||||||||||| || || Sbjct 82104 GTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTGAC 82163 Query 4442 AGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTT 4501 ||||| || | || ||||||||||||||||| || || ||| | ||||| | Sbjct 82164 TGGTAGAGCTTCTGATAAAAACTCTTGTTCTATTAGAACCGCCTCTCTTATTATTGACTC 82223 Query 4502 TATTTTATCTTTAGATGGTTTATT--TACTAAGTATCCAAACAATAAACACGCAAAATCA 4559 | |||| || || || || || || || | ||| |||| ||| || |||||| Sbjct 82224 GACACGTTCTTCCGAAGGCTTTTTGATAATATGTTT--AAATAATAGACAAGCGAAATCA 82281 Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619 ||||| | ||||||||||| || || | ||| || ||| | | ||| ||||| | | Sbjct 82282 CAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGA 82341 Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 |||| || |||||||| |||||||| || || |||||||| || | ||||| || Sbjct 82342 CCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACT 82401 Query 4680 GCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG---TCTTTAATCCATTTT 4736 || ||||| || | ||| || | || | | | |||| ||| |||||| | | Sbjct 82402 GCTGCAAAAGCAATTAAACGTTCTGCAAAAG---TAGATTTGGAATCTCCAATCCAATCT 82458 Query 4737 AATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---AT 4793 |||||||| | ||| ||||| ||| || | | || ||| ||||| || | | Sbjct 82459 AATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAG 82518 Query 4794 TTACTTTTTTCAAATGG-GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 | |||| || ||| ||||| || || || || |||| || ||||||||||| Sbjct 82519 TCCCTTTCTT----TGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGA 82574 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912 || ||||| || ||||| ||||| | ||| |||||||| | | | |||| | || || Sbjct 82575 GTGAATATTCTCGATAGCTATCTGCATTCCATAAAAGCAACGAACCTCTGGGATCTGGAC 82634 Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972 ||| | | || | ||||| | ||| ||| ||| || |||||||| || ||||| || Sbjct 82635 TTCCTGGCTGAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAA 82694 Query 4973 CGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAA 5032 || || || | ||||| || | |||| || ||| || | ||| || | Sbjct 82695 AGCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAG 82754 Query 5033 ATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 |||||| | ||||| || ||||| ||||||||||| || ||| | || || || || | Sbjct 82755 ATCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAA 82814 Query 5093 AGACCAAATATCAGGATA 5110 | ||| | ||| |||| Sbjct 82815 ATGCCAGACATCGTGATA 82832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426894323964722