Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1010 226 4e-54 seq7458 107 3e-18 >seq1010 Length=92424 Score = 226 bits (250), Expect = 4e-54 Identities = 594/906 (66%), Gaps = 49/906 (5%) Strand=Plus/Plus Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 |||||||||||| || || ||||| ||||| || || || ||||| | ||||||||||| Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 47912 CATAAAATCAAATGGATTAACTGCATTATA--------------------------AAtt 47945 |||||| ||||| ||||| | | || ||| |||| Sbjct 82007 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 82066 Query 47946 t--------ttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATC 47997 | ||| | | || | ||| | || || ||||| | ||||| || || Sbjct 82067 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 82126 Query 47998 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACT 48057 ||||| || ||||||||||| || | | ||||||||||| || | | ||||| Sbjct 82127 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 82186 Query 48058 CTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTAC-CGTT--TCCTCA--CTTGG 48112 ||||||| || || || || |||||| || || |||| ||| | ||| Sbjct 82187 CTTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCGACACGTTCTTCCGAAGGCTTTT 82246 Query 48113 TGGATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCT 48172 || ||| | ||||||||| | || ||| || ||||||||||| || ||||| ||||| Sbjct 82247 TG-ATA----ATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCT 82301 Query 48173 ACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAA 48232 ||| |||||||| || ||| | || || ||||| || || ||||| || ||||| || Sbjct 82302 ACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAA 82361 Query 48233 TATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCT 48292 ||| || ||||| |||||||| || | ||||| || || ||||| || | | | Sbjct 82362 TATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACG 82421 Query 48293 CTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTT 48349 ||| | || | | || | | | ||||| | |||||| | |||||| || Sbjct 82422 TTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGC 82481 Query 48350 TACACAAGGCATTGTTTC-TATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAA 48408 ||||||| | ||| | ||| || || |||||||||| |||| ||| ||||| | Sbjct 82482 AACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGA 82540 Query 48409 CGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAA 48468 ||| ||||| ||||| | | |||||||| ||||||||||| || || || ||||| | Sbjct 82541 TGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCA 82600 Query 48469 ATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAAT 48528 ||| ||||| || | | |||| |||||| || ||| | || ||||| | | Sbjct 82601 TTCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAGGAGGT 82660 Query 48529 TCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATT 48588 |||| ||| ||||| ||||| || ||||| || ||||| || | || |||| Sbjct 82661 TCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGAC 82720 Query 48589 TTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAG 48648 ||| | || | ||| | ||| |||||| || | ||| || ||||| Sbjct 82721 GTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCA 82780 Query 48649 CTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTG 48708 | |||||||| || || | || || ||||| | || ||| | ||| |||| || | Sbjct 82781 CAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGG 82840 Query 48709 GGAAAA 48714 |||||| Sbjct 82841 GGAAAA 82846 >seq7458 Length=1001 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78227 TCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTAT 78286 |||||||||||||| || || | ||| ||| || ||| || ||| || || Sbjct 6 TCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTATGAACATTTATTCCAAT 65 Query 78287 TCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTAT 78346 || || || | |||||||| | || || |||||| |||||||| || || ||||| Sbjct 66 ACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCTTCTAT 125 Query 78347 ACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGC 78406 ||| || || |||| | | ||||||||| || || | || | | |||||| || Sbjct 126 ACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGGAGTTCCAGC 185 Query 78407 ATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA 78448 ||||| | |||||| || ||||| ||||||||||||||||| Sbjct 186 GTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGA 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694409740637760