Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1010 192 8e-44 seq7458 96.9 5e-15 >seq1010 Length=92424 Score = 192 bits (212), Expect = 8e-44 Identities = 584/905 (65%), Gaps = 47/905 (5%) Strand=Plus/Plus Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 ||| |||||||| || || ||||| ||||| || || || ||||| | ||||||||||| Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 46401 CATAAAATCAAACGGATT----------------------------------AGTAACAT 46426 |||||| ||||| ||||| || || | Sbjct 82007 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 82066 Query 46427 TATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACG 46486 || ||| |||| | | || | ||| | || || ||||| | ||||| || ||| Sbjct 82067 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 82126 Query 46487 TTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACT 46546 ||||| || ||||||||||| || | |||| |||||||| || | | ||||| Sbjct 82127 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 82186 Query 46547 CTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGAT 46606 ||||||| || || || || |||||| || || ||| || || | Sbjct 82187 CTTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCGACACGTTCTTCCGAAGGCTTTT 82246 Query 46607 GCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAA 46666 || | ||||||||| | || ||| || ||||||||||| || ||||| |||||||| | Sbjct 82247 TGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTGA 82306 Query 46667 TTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAG 46726 ||||||| || ||| | || |||||||| || || || || || ||||| ||||||| Sbjct 82307 TTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAG 82366 Query 46727 CCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 | ||||| |||||||| || | ||||| || || || || || | | | ||| Sbjct 82367 CTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCTG 82426 Query 46787 CGTAACTGGCATCATTATGAA--TCCA--CC--TTTGA-GCCCAATCAGCCTTTTTCTTT 46839 | || | | ||| ||| |||| || | | | ||||| | ||||||||| Sbjct 82427 CAAAAGTAG----ATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 82482 Query 46840 ACACAAGGCATTGTTTC-TATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAAC 46898 ||||||| | ||| | ||| || || |||||||||| |||| | ||||| | Sbjct 82483 ACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 82541 Query 46899 ATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAA 46958 |||||||| ||||| | | |||||||| || ||||| || || ||||| ||||| | Sbjct 82542 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 82601 Query 46959 TCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATT 47018 ||| ||||| || | | || | ||||| || || | || ||||| | || Sbjct 82602 TCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAGGAGGTT 82661 Query 47019 CTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT 47078 ||| || ||||| ||||| || ||||| || || || || | || |||| Sbjct 82662 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 82721 Query 47079 TTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 47138 ||| | | || | ||| | ||| |||||| || | ||| || ||||| | Sbjct 82722 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 82781 Query 47139 TGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGG 47198 ||||| || || || | || || ||||| | || ||| | ||| |||||| || || Sbjct 82782 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGG 82841 Query 47199 AAAAA 47203 |||| Sbjct 82842 GAAAA 82846 >seq7458 Length=1001 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76823 CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATT 76882 ||||||||||||| || || | ||| || || ||| || | || || || Sbjct 7 CCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTATGAACATTTATTCCAATA 66 Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942 || || || ||||||| || | ||||| |||||| || || || ||||| |||||| Sbjct 67 CCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCTTCTATA 126 Query 76943 CTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002 ||||| || |||| | | ||||||||| || || | || | | |||||| || Sbjct 127 CTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGGAGTTCCAGCG 186 Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA 77043 ||||| | ||| || || ||||| || |||||||||||||| Sbjct 187 TTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGA 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712668528938880