Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2294 150 4e-31 seq1104 141 2e-28 seq52 125 1e-23 seq523 118 2e-21 >seq2294 Length=11734 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| ||||| || || |||||||| || ||||| |||||||||||||||| Sbjct 1568 CCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGAC 1509 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || | || || || || || |||||||||||||||||| ||| Sbjct 1508 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 1449 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| || |||||||| || || ||||| || | || ||||| || || || || Sbjct 1448 ATACCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCACTAGGCTCAACC 1389 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | | ||||||||||| | ||| ||||| || || || |||||| Sbjct 1388 TCTAACGGAATCGTCTTACCAGGCAACGTCTTCACAAAGATTTGCATT 1341 Score = 122 bits (134), Expect = 2e-22 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || ||||| | || ||||| |||||||||||||||| Sbjct 1340 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAC 1281 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || | || || || || || |||||||||||||||||| ||| Sbjct 1280 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 1221 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039 ||||| || |||||||| || || ||||| || | || ||||| || Sbjct 1220 ATACCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATC 1174 >seq1104 Length=79538 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| || | ||| ||||| ||||| ||||| |||| Sbjct 61722 ACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGA 61663 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || || || ||||| |||||||||| ||| ||||| || || Sbjct 61662 CAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGG 61603 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || || ||||||||||| || || || | || || ||||| | |||||| Sbjct 61602 GATTCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGAC 61543 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||||||||| ||||| ||||| ||||| || || |||||||| Sbjct 61542 TTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| || | ||| ||||| ||||| ||||| |||| Sbjct 61950 ACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGA 61891 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || || || ||||| |||||||||| ||| ||||| || || Sbjct 61890 CAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGG 61831 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || || ||||||||||| || || || | || || ||||| | |||||| Sbjct 61830 GATTCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGAC 61771 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||||||||| ||||| ||||| ||||| || || |||||||| Sbjct 61770 TTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61723 >seq52 Length=730220 Score = 125 bits (138), Expect = 1e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| ||||| || || |||||||| || ||||| |||||||||||||||| Sbjct 729734 CCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGAC 729675 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || | || || || || || |||||||||||||||||| ||| Sbjct 729674 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 729615 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039 ||||| || |||||||| || || ||||| || | || ||||| || Sbjct 729614 ATACCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATC 729568 >seq523 Length=224339 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | || ||| || || || || ||||| | Sbjct 140027 ACCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGA 140086 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || |||||||| || ||||| || | |||||||||||| || Sbjct 140087 AAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGG 140146 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || || ||||| || || || || || | || || || || | || || || Sbjct 140147 GATGCCTTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAAC 140206 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || || || || || ||||| | ||||| || || |||||||| Sbjct 140207 TTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 140254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046339085903436