Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1010 224 1e-53 >seq1010 Length=92424 Score = 224 bits (248), Expect = 1e-53 Identities = 605/917 (66%), Gaps = 54/917 (6%) Strand=Plus/Plus Query 23220 TTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTC 23279 ||||||||| ||||| || | || ||||| |||||||| || || | ||||||||||| Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 23280 CATAAAATCAAATGGATT---AGAAGTAT---TATATAC----------------AGCTT 23317 |||||| ||||| ||||| |||| || | || || | || Sbjct 82007 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 82066 Query 23318 TACA-------TGATAA-----TTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATT 23365 |||| | |||| ||| || ||||| ||||| | ||||||||| || | Sbjct 82067 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 82126 Query 23366 GACACATCAAATCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATA 23425 ||||||||| | | || || || |||| | ||||| | || || |||| || Sbjct 82127 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 82186 Query 23426 GTTTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGAT 23485 || ||| || ||| || ||| | |||||| | | | |||||| ||| | Sbjct 82187 CTTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCGACACGTTCTTCCGAAGGC---T 82243 Query 23486 ATTTTA-AATAC--TTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTAC 23542 ||| | |||| ||||| |||| ||| || |||||||||||||| ||||| || |||| Sbjct 82244 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTAC 82303 Query 23543 TAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATA 23602 | || |||||||| ||| | | ||| ||||| | |||||||| |||| ||| |||| Sbjct 82304 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 82363 Query 23603 TTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTG 23662 | || || || || ||||| |||| ||| || || || ||||| || | | |||| Sbjct 82364 TAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 82423 Query 23663 TACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTA 23722 |||| || | || |||| |||||| | | || ||| | |||||| |||| Sbjct 82424 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTT---TTTTG 82480 Query 23723 CACACTCAATT---GTTTC-AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTT 23778 || || ||| | ||| | || || || |||||||| |||||| ||| | Sbjct 82481 CA-ACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTG 82539 Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 || ||||||||||||| |||| ||||||||||| |||||||| || ||||| ||||| Sbjct 82540 ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGC 82599 Query 23839 AACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATC-TTTTAGCTAA 23897 | |||||||| || | | | || | | || || || | || | || ||| | Sbjct 82600 ATTCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAG-GAG 82658 Query 23898 ATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATG 23957 || ||| ||||| || ||||| || ||||||||||| | || || ||| ||||| Sbjct 82659 GTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATG 82718 Query 23958 TCTTTCATCA--GTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCA 24015 | ||| || ||| | | ||||| | | |||||| || ||||| || || Sbjct 82719 ACGTTCCCCAACCTTG--AGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCT 82776 Query 24016 TCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGT 24075 || || ||||||||| || | || |||||| | |||| | ||| | || || | Sbjct 82777 TCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCT 82836 Query 24076 ATTGGAAATATTACGAA 24092 || || || | ||||| Sbjct 82837 ATGGGGAAAAGGACGAA 82853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521293524087600