Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq523 129 1e-24 seq26094 114 3e-20 seq2294 111 4e-19 seq1104 109 1e-18 seq52 109 1e-18 >seq523 Length=224339 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || || |||||||| || ||||| || || || | || Sbjct 140251 CAGATTTTTGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCTGAT 140192 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || |||||||| ||||| || ||||| ||| Sbjct 140191 ACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAACAA 140132 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || ||||| || ||||||||| | |||||| |||| ||||| | Sbjct 140131 CGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAATATA 140072 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||||||||| |||||||| Sbjct 140071 CAGAAGGAATCAACACTTCATCTTGT 140046 >seq26094 Length=224 Score = 114 bits (126), Expect = 3e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || || ||||||||||| | || || ||| ||| Sbjct 4 CAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGTGAC 63 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || |||||||| || ||||||||||| || || |||||||| Sbjct 64 ACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCCGACCAGCAG 123 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | || | | ||||| || || Sbjct 124 CGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAATATC 183 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 184 CAGAAAGAGTCCACTCTTCA-CTTG 207 >seq2294 Length=11734 Score = 111 bits (122), Expect = 4e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || || || ||||| || ||| || ||||| ||||||||||| || ||||| ||||| Sbjct 1174 GATACTATTGAGAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 1233 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||||| | || ||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 1234 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 1293 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||||||||| Sbjct 1294 ATCCAGAAAGAGTCGACTCTGCATCTTGT 1322 Score = 111 bits (122), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || | | || || ||||| | | ||||| || || || Sbjct 1345 CAAATCTTTGTGAAGACGTTGCCTGGTAAGACGATTCCGTTAGAGGTTGA--GCCTAGTG 1402 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| || ||||| ||||||||||| || ||||| ||||| | Sbjct 1403 ATACTATTGAGAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCAAC 1462 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | || ||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 1463 AACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 1522 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||| ||||| ||||| | ||||||||| || Sbjct 1523 TCCAGAAAGAGTCAACCTTACATCTTGTTCTG 1554 >seq1104 Length=79538 Score = 109 bits (120), Expect = 1e-18 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || || ||||||||||| | || || ||| ||| Sbjct 61954 CAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGTGAC 62013 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || |||||||| || |||||||||||||| || || || || Sbjct 62014 ACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAACAG 62073 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | || | | ||||| || || Sbjct 62074 CGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAATATC 62133 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 62134 CAGAAAGAGTCCACTCTTCA-CTTG 62157 Score = 109 bits (120), Expect = 1e-18 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || || ||||||||||| | || || ||| ||| Sbjct 62182 CAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGTGAC 62241 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || |||||||| || |||||||||||||| || || || || Sbjct 62242 ACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAACAG 62301 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | || | | ||||| || || Sbjct 62302 CGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAATATC 62361 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 62362 CAGAAAGAGTCCACTCTTCA-CTTG 62385 Score = 105 bits (116), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || || ||||||||||| | || || ||| ||| Sbjct 61498 CAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGTGAC 61557 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| || || |||||||||||||| || || || || Sbjct 61558 ACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAACAG 61617 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | || | | ||||| || || Sbjct 61618 CGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAATATC 61677 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 61678 CAGAAAGAGTCCACTCTTCA-CTTG 61701 Score = 105 bits (116), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || || ||||||||||| | || || ||| ||| Sbjct 61726 CAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGTGAC 61785 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| || || |||||||||||||| || || || || Sbjct 61786 ACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAACAG 61845 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | || | | ||||| || || Sbjct 61846 CGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAATATC 61905 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 61906 CAGAAAGAGTCCACTCTTCA-CTTG 61929 >seq52 Length=730220 Score = 109 bits (120), Expect = 1e-18 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || || || ||||| || ||| || ||||| ||||||||||| || ||||| ||||| Sbjct 729568 GATACTATTGAGAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 729627 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||||| | || ||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 729628 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 729687 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||| ||||| ||||| | ||||||||| || Sbjct 729688 ATCCAGAAAGAGTCAACCTTACATCTTGTTCTG 729720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203271076005796