Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq26094 96.9 3e-15 seq1104 95.1 1e-14 seq523 89.7 5e-13 >seq26094 Length=224 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698 || || ||||| ||||||| || || ||| ||| ||||| || || || || || | Sbjct 224 CCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAAT 165 Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACG 41758 || || | || || |||||||| || || || ||||| ||||| ||||| | |||| Sbjct 164 GTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATT 105 Query 41759 CTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCACCTC 41817 | || || || ||| | || || |||| | | ||||| |||| || || || Sbjct 104 CCTTCTTTATCT-TGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTC 46 Query 41818 CACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||||||||| |||| ||||| || ||||||||||| Sbjct 45 CAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq1104 Length=79538 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || || ||| ||| ||||| || || || || || Sbjct 61721 CCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGAC 61662 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || |||||||| || || || ||||| |||||||| || | || Sbjct 61661 AATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGG 61602 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | || || || ||| || ||||| | | ||||| |||| || || Sbjct 61601 ATTCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACT 61542 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||||||||| |||| ||||| || ||||||||||| Sbjct 61541 TCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || || ||| ||| ||||| || || || || || Sbjct 61949 CCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGAC 61890 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || |||||||| || || || ||||| |||||||| || | || Sbjct 61889 AATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGG 61830 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | || || || ||| || ||||| | | ||||| |||| || || Sbjct 61829 ATTCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACT 61770 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||||||||| |||| ||||| || ||||||||||| Sbjct 61769 TCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61723 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || || ||| ||| ||||| || || || || || Sbjct 62177 CCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGAC 62118 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || |||||||| || || || ||||| |||||||| || | || Sbjct 62117 AATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGG 62058 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | || || || ||| | || || |||| | | ||||| |||| || || Sbjct 62057 ATTCCTTCTTTATCT-TGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGAC 61999 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||||||||| |||| ||||| || ||||||||||| Sbjct 61998 TTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61951 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || || ||| ||| ||||| || || || || || Sbjct 62405 CCTCCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGAC 62346 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || |||||||| || || || ||||| |||||||| || | || Sbjct 62345 AATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGG 62286 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | || || || ||| | || || |||| | | ||||| |||| || || Sbjct 62285 ATTCCTTCTTTATCT-TGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGAC 62227 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||||||||| |||| ||||| || ||||||||||| Sbjct 62226 TTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 62179 >seq523 Length=224339 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || |||||||| || ||||||||||| Sbjct 140028 CCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAA 140087 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || || || ||||| || || || || || |||||||| | || Sbjct 140088 AGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGG 140147 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || ||| | ||| |||| || | ||| | | | || || | ||| || Sbjct 140148 ATGC-CTTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAAC 140206 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||||| ||||| ||||| || ||||| || ||||||||||| Sbjct 140207 TTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 140254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462131595280800