Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= AC_000012.1 Length=30944 Score E Sequences producing significant alignments: (Bits) Value seq16058 352 6e-93 seq15970 93.3 8e-15 >seq16058 Length=1913 Score = 352 bits (390), Expect = 6e-93 Identities = 611/874 (70%), Gaps = 12/874 (1%) Strand=Plus/Plus Query 17848 TACGTAAACGTAGGCGGGCGTTGGTCAGTTGACTTCATGGACACGGTCAATCCCTTCAAT 17907 ||| | ||| | |||| | ||||| ||||| ||||||| || ||||| || || Sbjct 69 TACATCAACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAAC 128 Query 17908 CATCACCGAAATGAAGGGCTAAAGTACCGGTCCCAGATATTAGGAAATGGGCGGTTTGTA 17967 || ||||| |||| || ||| ||||||||| | | | || ||||| || | ||| Sbjct 129 CACCACCGGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTATGT- 187 Query 17968 GACTTTC-ACATTCAAGTGCCTCAAAAATTTTTTGCTATCAAAAGTTTGCTTTTGCTCCC 18026 | ||||| |||| ||||||||||||||||| |||||| |||| | | ||| | || || Sbjct 188 GCCTTTCCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACC 247 Query 18027 CGGCAGTTACACCTATGAGTGGAGCTTTCGCAAAGACGTAAACATGGTCTTGCAAAGCTC 18086 ||| |||||||||||||||| ||| | || | || ||||||||| ||||||| || Sbjct 248 TGGCTCCTACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTC 307 Query 18087 CTTAGGTAATGATCTCAGAGCTGACGGCGCAAGGCTCGAGATTCA-CAGTGTGAATCTTT 18145 | | || ||||| |||||| | || || || | | || |||| ||| | || || | Sbjct 308 CCTTGGAAATGACCTCAGAACAGATGGTGCTA-ACATAAGTTTCACCAGCATCAACCTCT 366 Query 18146 ACGCCAGTTTTTTCCCCATGGCGCACAATACAGCATCAACTCTTGAAGCGATGCTGCGTA 18205 | |||| || ||||||||||| ||||| || || |||||||||||||| |||||||| | Sbjct 367 ATGCCACCTTCTTCCCCATGGCTCACAACACCGCTTCAACTCTTGAAGCCATGCTGCGCA 426 Query 18206 ATGAAACAAATGACCAGACTTTTTTGGACTAC--CTGAGCAGCGCAACGATGATGTTTCC 18263 | || || ||||| ||| | || |||||| || ||||| ||| ||| | | || Sbjct 427 ACGATACCAATGATCAGTCATTCAACGACTACCTCTCTGCAGC-TAAC-ATGCTTTACCC 484 Query 18264 CATTCCTGCAGGTCAAACCCAAGTGCCAGTATCAATTCCAGCCAGAAACTGGGCAGCCTT 18323 ||| ||||| | |||| | | ||| | || || ||| | | |||||||||||||| Sbjct 485 CATCCCTGCCAATGCAACCAACATTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTT 544 Query 18324 TAGGGGTTGGAGCTTTACTCGTATTAAACAACAA-GAAACGCCCAACATAGGCTCACCGT 18382 ||||| ||| ||| || | | | || | ||| || || || | || ||| || Sbjct 545 CAGGGGCTGGTCCTTCAC-CAGACTCAAAACCAAGGAGACTCCATCTCTTGGATCAGGGT 603 Query 18383 ATGACCCGTACTTTAAGTACAGCGGAAGCATACCTTTCTTGGATGCTACTTTTTACCTAA 18442 || || ||||| || ||| || || | | |||||| ||||||||||| | Sbjct 604 TCGATCCCTACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTA 663 Query 18443 CACACACCTTTCAGCGAGTTTCAATTATGTTTGACTCTTCAGTAAGTTGGCCAGGAAACG 18502 ||||| || || | || || ||||||||||| ||||| || ||||| || || | Sbjct 664 ACCACACTTTCAAGAAGGGCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAATG 723 Query 18503 ACCGACTTCTAACTCCAAACGAGTTTGAAATAAAACGTCAC-ATTGACGCTGAAGGACTA 18561 || | || | ||||||| ||||||||||| || || ||| | || | |||||| Sbjct 724 ACAGGCTGTTGTCTCCAAATGAGTTTGAAATCAAGCG-CACTGTGGATGGGGAAGGATAC 782 Query 18562 TGTGTGGGTCAAAGTAACATGACTAAGGACTGGTTTTTGGTGCAAATGCTGTCCAACTAC 18621 ||||| ||| | |||||||| || |||||||| |||| || ||||| |||||||| Sbjct 783 AATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGCCAACTAC 842 Query 18622 AACATCGGATATCAGGGCTTTTATTTACCAGAAAACAACAAAGACAGAACATACTCTTTT 18681 ||||| || || ||||||||||| | || || |||| || | | ||||| ||| Sbjct 843 AACATTGGCTACCAGGGCTTTTACATCCCTGAGGGATACAAGGATCGCATGTACTCCTTT 902 Query 18682 GTTCGAAACTTTGAACCCCTGGCCCGGCAAGTGG 18715 | ||||||| | || || | |||| |||| Sbjct 903 TTCAGAAACTTCCAGCCTATGAGCAGGCAGGTGG 936 >seq15970 Length=4606 Score = 93.3 bits (102), Expect = 8e-15 Identities = 206/305 (68%), Gaps = 3/305 (1%) Strand=Plus/Minus Query 12501 GTACCCCCGAGGTACTTTGCGCCTACGGAAGGAAGAAACAGCATCGTTTACGATCAG-TT 12559 ||||||||| ||||| | |||||||||||||| ||| ||||||| |||| || | Sbjct 853 GTACCCCCGCGGTACCTGGCGCCTACGGAAGGGAGACACAGCATTCGTTACTCGGAGCTG 794 Query 12560 TCCCACTTGCTACGACACCACTAAGCTCTTCCTCGTGGACAATAA-AAGCGCTGACATTA 12618 || | | || ||||| ||||| ||| | | || || ||||| || |||| ||||| Sbjct 793 TCGCCCCTG-TACGATACCACCAAGTTGTATCTGGTTGACAACAAGTCGCGCGGACATCG 735 Query 12619 CCGATCTCAACATGCAAAACGACCACAGCCATTTTGCCACCACCGTTGTTCAAAATAGCG 12678 || || ||| || |||||||||||| | || ||||| || || || || | | Sbjct 734 CCTCCCTGAACTATCAGAACGACCACAGCAACTTCCTGACCACGGTGGTGCAGAACAATG 675 Query 12679 AATTTACGCCCCGCGAAGCAAGTACCCAACATATAACACTGGACAACCGTTCCCGTTGGG 12738 | ||||| ||| || || || ||||| || | | ||| | || || || |||| Sbjct 674 ACTTTACCCCCACGGAGGCTAGCACCCAGACCATCAACTTTGACGAACGGTCGCGATGGG 615 Query 12739 GTGCTAAGCTTAAGACTCTGATTCAAACAAACTTACCCTCAGTAACAGACTATATGTACA 12798 | | | | || ||||| | || || || ||| | ||| || | || || |||| || Sbjct 614 GCGGTCATCTGAAGACCATCATGCACACCAACATGCCCAACGTGAACGAGTACATGTTCA 555 Query 12799 CCAAC 12803 |||| Sbjct 554 GCAAC 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98869782927456