Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5310 253 2e-62 >seq5310 Length=161011 Score = 253 bits (280), Expect = 2e-62 Identities = 614/918 (67%), Gaps = 60/918 (7%) Strand=Plus/Plus Query 16675 TTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTC 16734 ||| || || | ||| || ||||| |||||||| || ||||| |||| |||||||| || Sbjct 62654 TTGATATTCACCAACCCGCTTTTCAAAAAAGTTCGTCTTGCCTTCTATGGATATATTTTC 62713 Query 16735 CATGAAATCAAAAGGATTAGTAGC-TGA-------------AAATATTTTAGA------- 16773 ||| ||||||||||||||| || ||| ||| | || | | Sbjct 62714 CATAAAATCAAAAGGATTATCAGAGTGATAAATCTAAACAGAAACAATTAAAACGAAAAC 62773 Query 16774 -------------GTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATT 16820 ||| || ||||| | | | | ||| || | ||||| ||||| | Sbjct 62774 CACAAACTTTTTCGTAACCGAGTTCAACCAGCAGCCGATCAGCAATGAATTCAATATACT 62833 Query 16821 GGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATC 16880 ||||||||| | ||| |||||||| || | || || || | ||||| | || ||| Sbjct 62834 GGCACATTAGCTTGCAATTCATTCCAATTAAACTGACTGGCAAGGCTTCAGACAGAAACT 62893 Query 16881 GTTGCTCTATAACAACCGCTTCCTTAATAAT--ACTAGCAACTCGTTCCTCGGACGGTGT 16938 ||| || || | ||||| ||||| ||||| ||| |||| || || || || | Sbjct 62894 CTTGTTCGATTAGCACCGCCTCCTTCATAATCGACT--CAACGCGAACCCTAGAAGGCTT 62951 Query 16939 ATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCT 16998 | ||| || ||||||| ||||| ||||| || ||||||||||| |||||||| || Sbjct 62952 TTTAATAATGTGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTCTACT 63011 Query 16999 GATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATAT 17058 ||| | || ||| ||| | ||| || ||||| |||||| ||||| | ||||||||| Sbjct 63012 GATTAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATAT 63071 Query 17059 CGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTC 17118 || ||||| || || || || | || || || | |||||| || | || ||||| Sbjct 63072 AGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTTC 63131 Query 17119 GGCGTACGTCGCGTCTTTG--TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTT 17176 || |||| | ||| | | || |||||| | | |||| | ||||||| | | Sbjct 63132 TGCAAACGT--AGACTTAGAATCACCAATCCAATCCAATGCCCATTGAGCTTTTTTCGCT 63189 Query 17177 ATGCAATCCATCGTTTC-TATGGCCTT--AAATAATTTCTCTTTTTCCTGTAG-GTCGAT 17232 | ||| | ||| | ||| || || ||| || ||||||| || ||| ||| | Sbjct 63190 ACACAAGTTA-GGTTGCTTATAGCATTGAAAAGAAAGTCTCTTT---CTTTAGAGTCTTT 63245 Query 17233 TATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTG 17292 |||||||||||||| ||||| ||||||||| || || || ||||| || |||||||| Sbjct 63246 GATATACGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTG 63305 Query 17293 AAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC--CACGTAGAATCGTTCCGCT 17350 | || ||||| || || | |||| || || || || || || || |||||| | Sbjct 63306 CATCCCATAAAAACAGCGAACCTCCGGGATCTGTACCTCTTGAC-TA-AAGCGTTCCAGT 63363 Query 17351 AGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA--ATATATGCTTAATGA 17408 | ||||| || || || || ||||| || || || |||| | ||||| | || | Sbjct 63364 AAGTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGAT--ATAA 63421 Query 17409 AATATTTTTCGTCCGGTGTAAG-AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACT 17467 ||| ||| | |||| || | ||| | | || |||||||| | |||||| Sbjct 63422 AATGACGTTCCCCAACCTTAAGTGACTC-CCAATGTGTGAAGTCTTTGGACAAATCCACC 63480 Query 17468 TCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTAT 17527 ||||| ||||| ||| |||||| |||||||| || | || ||| ||||||| ||| Sbjct 63481 TCTTCTACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATAT 63540 Query 17528 TGTATGGGGAATACAACA 17545 | ||||||||| | |||| Sbjct 63541 TCTATGGGGAAAAGAACA 63558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517383556472640