Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5310 219 4e-52 >seq5310 Length=161011 Score = 219 bits (242), Expect = 4e-52 Identities = 596/905 (66%), Gaps = 48/905 (5%) Strand=Plus/Plus Query 15913 TTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTC 15972 ||| || |||| ||| || ||||| || ||||| || || || |||| ||||||||||| Sbjct 62654 TTGATATTCACCAACCCGCTTTTCAAAAAAGTTCGTCTTGCCTTCTATGGATATATTTTC 62713 Query 15973 CATAAAATCAAAGGGATTAGTAGC-TGA-AAATATC-----------TTA----GAGTAC 16015 |||||||||||| |||||| || ||| |||| | ||| || || Sbjct 62714 CATAAAATCAAAAGGATTATCAGAGTGATAAATCTAAACAGAAACAATTAAAACGAAAAC 62773 Query 16016 CCCAG----TTCCGTAACTAATCT-------------ATCTGCTACAAATTCTATATATT 16058 | || || |||||| | | ||| || | ||||| ||||| | Sbjct 62774 CACAAACTTTTTCGTAACCGAGTTCAACCAGCAGCCGATCAGCAATGAATTCAATATACT 62833 Query 16059 GACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATT 16118 | ||||||| | |||||| ||||| || | | || || | |||| | | ||| | Sbjct 62834 GGCACATTAGCTTGCAATTCATTCCAATTAAACTGACTGGCAAGGCTTCAGACAGAAACT 62893 Query 16119 GTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTC--AGACGGTGT 16176 |||||| || | ||||| || || || || || || | | ||| || | Sbjct 62894 CTTGTTCGATTAGCACCGCCTCCTTCATAAT--CGACTCAACGCGAACCCTAGAAGGCTT 62951 Query 16177 ATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCT 16236 | | | ||| ||||||| ||||| |||||||| ||||||| |||||||||||| || Sbjct 62952 TTTAATAATGTGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTCTACT 63011 Query 16237 GATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT 16296 ||| | || || ||| | || || ||||| |||||| ||||| | ||| ||||| Sbjct 63012 GATTAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATAT 63071 Query 16297 CGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTC 16356 || || || || || || || | || || || | |||||| || | || ||||| Sbjct 63072 AGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTTC 63131 Query 16357 CGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTAT 16416 || |||||| | || || |||||| | | | |||||| ||||||| || Sbjct 63132 TGCAAACGTAGACTTAGAATCACCAATCCAATCCAATGCCCATTGAGCTTTTTTCGCTAC 63191 Query 16417 ACAATCCATCGTTTC-TATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTAT 16473 |||| | ||| | ||| || || ||| || |||| |||| | | || | || Sbjct 63192 ACAAGTTA-GGTTGCTTATAGCATTGAAAAGAAAGTCTC--TTTCTTTAGAGTCTTTGAT 63248 Query 16474 ATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAA 16533 ||||||||| || |||| | ||||||||| || || || ||||| || |||||||| | Sbjct 63249 ATACGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTGCAT 63308 Query 16534 TCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTT 16593 ||||| || || ||| |||||| || ||||| || ||| |||||| | ||| Sbjct 63309 CCCATAAAAACAGCGAACCTCCGGGATCTGTACCTCTTGACTAAAGCGTTCCAGTAAGTT 63368 Query 16594 CTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA--ATATGTGCTTAATGAAATAT 16651 || || || || ||||| || ||||| || |||| | || || | || |||| Sbjct 63369 TTCTAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGAT--ATAAAATGA 63426 Query 16652 TTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCT 16711 ||| || |||| | ||||| | | || |||||||| | |||||| |||||| Sbjct 63427 CGTTCCCCAACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTCTTCT 63486 Query 16712 GGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATG 16771 ||||| || |||||| |||||||| || | | ||| ||||||| |||| |||| Sbjct 63487 ACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTCTATG 63546 Query 16772 GGAAA 16776 || || Sbjct 63547 GGGAA 63551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511254276151360