Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5310 264 1e-65 seq4842 95.1 1e-14 >seq5310 Length=161011 Score = 264 bits (292), Expect = 1e-65 Identities = 442/634 (70%), Gaps = 9/634 (1%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 || ||||||| | ||| ||||| || || |||| || ||||||||||| ||||| || Sbjct 62962 TGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTCTACTGATTAACTCA 63021 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 || ||| | | ||| ||||| || || ||||| || ||||||||||| | ||| || Sbjct 63022 TTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATATAGCCGCGAAG 63081 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG 24299 || || || |||| |||||||||||| |||||||||| | | |||| || ||| Sbjct 63082 CTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTTCTGCA-AACGT 63140 Query 24300 GCGCT----GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA- 24354 || ||| ||||| | ||||| | || || || |||||||| | Sbjct 63141 AGACTTAGAATCACCAATCCAATCCAATGCCCATTGAGCTTTTTTCGCTACACAAGTTAG 63200 Query 24355 -TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 24413 ||| || ||||||||| || ||| ||| | |||| ||| ||||| | ||| ||||| Sbjct 63201 GTTG-CT-TATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTTGATATACGTATCG 63258 Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 || | ||| |||||||| |||||||| || || || || || || | || || ||| Sbjct 63259 ATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTGCATCCCATAAAAA 63318 Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACT 24533 || | | |||| | |||||||| ||| || ||| ||||| ||| ||||| ||| Sbjct 63319 CAGCGAACCTCCGGGATCTGTACCTCTTGACTAAAGCGTTCCAGTAAGTTTTCTAGAACT 63378 Query 24534 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 24593 ||||| ||||| || ||||| || ||||| |||| | |||||||| ||| | Sbjct 63379 ATTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAAATGACGTTCCCCAACC 63438 Query 24594 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 | ||| | ||||| ||| ||||| || | |||||| ||||| || ||||| || Sbjct 63439 TTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTCTTCTACAGTCCAGAAA 63498 Query 24654 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 24713 || ||| | |||||||| || | || |||||| |||||||||| || || |||| |||| Sbjct 63499 GAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTCTATGGGGAAAAGAACA 63558 Query 24714 AATCTATTTGGATTTTTTGCAAGGATTGGTTCCA 24747 || | | ||| ||| | ||| | ||||||| Sbjct 63559 AAACGGTGTGGGTTTGGTTTAAGCAAGGGTTCCA 63592 >seq4842 Length=69696 Score = 95.1 bits (104), Expect = 1e-14 Identities = 270/419 (64%), Gaps = 46/419 (11%) Strand=Plus/Plus Query 54242 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA---CTGGCACGAATATTACTA 54298 ||||| ||| | ||||| ||||||| || || | ||| ||| ||||||||| Sbjct 44523 CCATTTGATTCCCCATTCGTCCCGGCTATGTAAGTCCCAAGACTG---CGAATATTATGG 44579 Query 54299 ATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 54358 | || || || ||||| || ||||||| || | || ||| |||| || ||| Sbjct 44580 ACATTTACTCCAATACCCCCAGCATTTTTAGATATAATGGCACATTCCTTTAGAGTGTCA 44639 Query 54359 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG--GT 54416 || || || ||||| |||||||| |||| | | || || || || || | ||| || Sbjct 44640 TAAATACCTTCTATGCTATCATCTTTCATAGTGATAAGGAAGCAACTTGAAAGTTGTGGT 44699 Query 54417 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 54476 || ||||| | |||||| | || || ||||| || ||||||||||||||||| | Sbjct 44700 TTCGGT--GTTCCAGAATTAAAAAGAGTCGGTGAAGCATGTGTAAACCATTTTTCAGACA 44757 Query 54477 GTAGATTGTACGTCTCGATAGCTG--------AGTCTATAT---------CCCATTG--- 54516 ||| || || |||| ||| | || ||| |||| | |||| Sbjct 44758 TTAGGTTATATGTCTAGATTGTTGCAAAAATTAGTGCATATTCACTTACCTCGATTGCAC 44817 Query 54517 ----------------ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 54560 ||| || || |||| || ||||||| ||| |||||||| | | Sbjct 44818 TTTCAATGTCGGACGTATGTATCCCAACTGACACCCGCATTAGCATATGCTGAGGGCGCT 44877 Query 54561 CAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 54619 || | |||| |||||||||||| | ||| ||| | |||||||| | |||| |||| Sbjct 44878 CATGAACCTTGCCGTTTATTTTCAGAAGGTATGATCTCTCCAAAGTCTAAAAAGAAAAA 44936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593535705767040