Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3731 87.8 2e-12 >seq3731 Length=1156867 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 28956 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 29015 || || ||||| || || | |||||| | ||||| ||||| || || ||| || Sbjct 1054521 GTCAACATGCAGATTTTTGTGAAAACACTTACGGGGAAAACTATAACGCTTGAAGTTGAG 1054580 Query 29016 CCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 29075 || || || || | | | |||| ||||| |||||||| ||| | || | Sbjct 1054581 CCTGCTGATACAATTGAAGCAGTTAANGCTAAAATCCAAGATAAAGAGGGTATCCCACCA 1054640 Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||||||| | ||||| ||||| |||||||||||||||||| | ||| | | || Sbjct 1054641 GATCAACAACGTCTTATTTTTGCTGGCAAACAACTGGAAGATGGAAGAACCGTCTCTGAC 1054700 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCA-CATGGTGTTACGATTACGAGGAGGGTA 29191 || || || ||| | |||||||| ||||| | |||| | ||| | || || ||||| Sbjct 1054701 TATAACATACAGTAAGAATCTACACTTCATCTTGGTTCTTCGACTTCGTGG-GGGTA 1054756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428205240798440