Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_001720.1 Length=43804 Score E Sequences producing significant alignments: (Bits) Value seq16058 176 1e-39 >seq16058 Length=1913 Score = 176 bits (194), Expect = 1e-39 Identities = 519/786 (66%), Gaps = 22/786 (3%) Strand=Plus/Plus Query 19752 CAACATTGGTGCCAGATGGTCCGTGGACCAGATGGACAACGTCAATCCCTTCAACCACCA 19811 ||||||||| ||||| ||||| | |||| |||||||| || ||||| || |||||||| Sbjct 74 CAACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCA 133 Query 19812 CCGTAACTGGGGGTTGAAG-TACAGGTCTCAGCTGCTCGGAAACAGCAGATA-CTGCCGT 19869 ||| || || || | | ||| |||| ||| || || || || | || |||| | Sbjct 134 CCGGAA-TGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTATGTGCC-T 191 Query 19870 TTCCATATTCAGGTGCCGCAGAAATACTTTGCCATCAAGAATCTGCTCCTGTTGCCCGGC 19929 ||||| || || ||||| || |||| |||||| ||||||| || || || | || ||| Sbjct 192 TTCCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGC 251 Query 19930 ACCTACACTTACGAGTGGGTCCTCAGAAAGGATCCCAACATGATTCTGC--AGTCCAGCC 19987 ||||||| || |||||| | ||||||||| | |||||| | |||| ||| | || Sbjct 252 TCCTACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTC--CC 309 Query 19988 TTGGCAACGACTTGCGCGCGGACGGCGCGCAGATCGTGTATACCGAGGTGAACCT-TATG 20046 |||| || ||| | | | || || || | || | ||| | ||||| ||| Sbjct 310 TTGGAAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCATCAACCTCTAT- 368 Query 20047 GCCAATTTCATGCCCATGGACCACAATACCAGCAACCA-GCTGGAGCTGATGTTGCGCAA 20105 |||| ||| | ||||||| ||||| ||| || | | || || ||| ||||||| Sbjct 369 GCCACCTTCTTCCCCATGGCTCACAACACC-GCTTCAACTCTTGAAGCCATGCTGCGCAA 427 Query 20106 CGCTACCAACGACCAGACCTTCGCGGACTACTTGGGCGCCAAGAACGCTCTCTACAACGT 20165 || |||||| || ||| | ||| |||||| | || ||| || ||| | | Sbjct 428 CGATACCAATGATCAGTCATTCAACGACTACCTCTCTGCAGCTAACATGCTTTACCCCAT 487 Query 20166 TCCGGCCGGCTCCACGCTGCTGACCATCAATATTCCCGCCAGAACATGGGAGGGTATGCG 20225 || ||| | || | | || || || | | | |||| | | | Sbjct 488 CCCTGCCAATGCAACCAACATTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTTCAG 547 Query 20226 GGGCTGGTCTTTTACCCGCCTCAAGGCCTCGGAGACGCCCCAGCTGGGCGCTCAGTACGA 20285 ||||||||| || ||| | ||||| || |||||| || || || | || ||| Sbjct 548 GGGCTGGTCCTTCACCAGACTCAAAACCAAGGAGACTCCATCTCTTGGATCAGGGTTCGA 607 Query 20286 CGTCGGTTTCAAGTATTCAGGCTCCATTCCCTATTCGGATGGCACCTTTTACCTGTCCCA 20345 | ||| ||||| || || |||||||| ||||||||| |||||||| ||| Sbjct 608 TCCCTACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTAACCA 667 Query 20346 CACGTTCCGCAGTATG--AGCGTGTTGTTTGATACCTCTATCAACTGGCCTGGCAACGAC 20403 ||| ||| || | | | | ||||||| |||| ||| |||||||||||| ||| Sbjct 668 CACTTTC--AAGAAGGGCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAATGAC 725 Query 20404 CGTCTGCTCACACCTAACCTGTTCGAGATCAAGAGGCCAGTGGCCACCGACAGCGAAGGC 20463 | ||| | | || || ||| || |||||| | | ||| || | ||||| Sbjct 726 AGGCTGTTGTCTCCAAATGAGTTTGAAATCAAGCGCACTGTG------GATGGGGAAGGA 779 Query 20464 TTCACTATGTCGCAGTGCGACATGACCAAGGACTGGTTCCTCGTGCAGATGGCCACCAAC 20523 | || | || | || ||| |||||||||| ||||||||||| || |||||| ||||| Sbjct 780 TACAATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGCCAAC 839 Query 20524 TACAAC 20529 |||||| Sbjct 840 TACAAC 845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140009542470816