Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_001813.1 Length=33213 Score E Sequences producing significant alignments: (Bits) Value seq16058 140 7e-29 >seq16058 Length=1913 Score = 140 bits (154), Expect = 7e-29 Identities = 507/787 (64%), Gaps = 26/787 (3%) Strand=Plus/Plus Query 16059 CAATATTGGCGCTAGGTGGTCTTTGGATGTAATGGATGAAATTAATCCTTTCAACCACCA 16118 ||| |||||||| ||||||||| | || |||||| | | ||||| || |||||||| Sbjct 74 CAACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCA 133 Query 16119 TAGAAATTTGGGATTGAAGTACAGAAGTCA--GCTGTTGGGCAATGGCAGATATTGTAAA 16176 | ||| || | ||| | ||| ||| ||||||||||| | ||| Sbjct 134 CCGGAATGCTGGCCTACGCTACCG--GTCCATGCTTCTGGGCAATGGCCGTTATGTGCCT 191 Query 16177 TTCCATATCCAAGTACCACAGAAATTCTTTGCGCTTCGCAATTTGTTGCTGCTGTCTGGC 16236 ||||| || ||||| || || ||||||||||| | || | | || || ||||| Sbjct 192 TTCCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGC 251 Query 16237 ACATACAATTATGAGTGGTACTTTAGAAAAGACCCTAACATGATTTTGCAGAGTACGCTT 16296 | |||| ||||||||| |||| ||||| | |||||| | |||| ||| | ||| Sbjct 252 TCCTACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTCCCTT 311 Query 16297 GGCAATGACTTGAGAGCAGATGGAGCCTCTGTAACTTATACTAGCATTAATTTGTATGTG 16356 || |||||| | ||| ||||||| || ||| || || ||||| || | |||| Sbjct 312 GGAAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCATCAACCTCTATGCC 371 Query 16357 GCATTTTTTCCTCTCGCTTATGATACTG--TAAGCGAGCTGGAATTGATGCTGCGTAACG 16414 | || || || | ||| | | || | | | | || ||| |||||||| |||| Sbjct 372 ACCTTCTTCCCCATGGCTCACAACACCGCTTCAAC--TCTTGAAGCCATGCTGCGCAACG 429 Query 16415 CGACTAACGATCAGAATTTTTCTGATTATCTTGGCGCTGTTAATAATCTGTATCAGATTC 16474 || || |||||| || || || || || | ||| | || || | || | Sbjct 430 ATACCAATGATCAGTCATTCAACGACTACCTCTCTGCAGCTAACATGCTTTACCCCATCC 489 Query 16475 CAGCCAACAGTACGAGCGTTGTGGTCAATGTCCCTGATAGATC----TTGGGGAGCTTTT 16530 | ||||| || | | || |||| ||| | | || |||| ||| || Sbjct 490 CTGCCAATGCAACCAACATT----CCAATTTCCATCCCATCTCGCAACTGGGCAGCCTTC 545 Query 16531 CGAGGTTGGTCGTTTACTAGAATTAAAGCTAGAGAGACGCCAGCAATTGGAGCCACAAAA 16590 | || ||||| || || ||| | ||| | | ||||| ||| | ||||| | Sbjct 546 AGGGGCTGGTCCTTCACCAGACTCAAAACCAAGGAGACTCCATCTCTTGGATCAGGGTTC 605 Query 16591 GATCCGAATTTCACATATTCAGGATCAATTCCCCTGTTGGATGGCACATTTTACCTTTCT 16650 ||||| | ||| ||||| ||||| |||||| |||||||||| ||||||||| Sbjct 606 GATCCCTACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTAAC 665 Query 16651 CATACTTTTAACAGGGTTTCTATTCAGTGGGATTCCAGTGTTCCCTGGCCTGGAAATGAC 16710 || ||||| || | || || || || || ||| || ||||||||| |||||| Sbjct 666 CACACTTTCAAGAAGGGCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAATGAC 725 Query 16711 AGATTGCTTACGCCAAATTGGTTTGAAATTAAACGCAATGTTAACGCTGATCCAGAAGGT 16770 || || | | |||||| ||||||||| || |||| ||| ||| ||||| Sbjct 726 AGGCTGTTGTCTCCAAATGAGTTTGAAATCAAGCGCACTGT------GGATGGGGAAGG- 778 Query 16771 TATACAATGT--CACAAAGTTCTATCACCAAGGACTGGTTTATGGTGCAAATGGCAGCCA 16828 ||||||||| | ||| | || ||||| |||||||| |||| || ||| |||| Sbjct 779 -ATACAATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGCCA 837 Query 16829 ATTATAA 16835 | || || Sbjct 838 ACTACAA 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106128423238800