Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq4755 89.7 4e-13 >seq4755 Length=318840 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | | ||||| |||| ||| ||||||||||| ||||| ||||| | | Sbjct 280589 CCACCTCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 280530 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||||||||| || || ||| | || | | || || || || Sbjct 280529 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 280470 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| |||||| | | | ||| |||| ||||| | Sbjct 280469 ATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACT 280410 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| ||||| || || | || || |||||||| ||||| Sbjct 280409 TCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||| ||||||||||| ||||| ||||| | || || | | ||| Sbjct 279890 AGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCC 279831 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || | | || || || || | || ||||| || Sbjct 279830 TCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATCCCCTCCTTATCC 279771 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| |||||| | | | ||| |||| ||||| ||||| ||||| ||| Sbjct 279770 TGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTC 279711 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || || || | || || |||||||| |||||| Sbjct 279710 TTACCAGTCAGAGTCTTTACAAATATCTGCATT 279678 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||| ||||||||||| ||||| ||||| | || || | | ||| Sbjct 280118 AGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCC 280059 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || | | || || || || | || ||||| || Sbjct 280058 TCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCC 279999 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| |||||| | | | ||| |||| ||||| ||||| ||||| ||| Sbjct 279998 TGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTC 279939 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | || || |||||||| ||||| Sbjct 279938 TTACCAGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||| ||||||||||| ||||| ||||| | || || | | ||| Sbjct 280346 AGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCC 280287 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || | | || || || || | || ||||| || Sbjct 280286 TCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCC 280227 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| |||||| | | | ||| |||| ||||| ||||| ||||| ||| Sbjct 280226 TGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTC 280167 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | || || |||||||| ||||| Sbjct 280166 TTACCAGTCAGAGTCTTCACAAATATCTGCAT 280135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422130295878368