Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5310 122 9e-23 >seq5310 Length=161011 Score = 122 bits (134), Expect = 9e-23 Identities = 398/613 (65%), Gaps = 4/613 (1%) Strand=Plus/Minus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 ||||| | ||| || || ||||||||||| |||| | || || |||| | |||||| Sbjct 63572 AACCCACACCGTTTTGTTCTTTTCCCCATAGAATATCATGATATCTGGCATTTCTACAAA 63513 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 ||||| | ||| || |||||||| || || |||||||| ||||||| ||| | | Sbjct 63512 AAGGCGGTGGCTTCTTTCTGGACTGTAGAAGAGGTGGATTTGTCCAAAGACTTCACACAT 63453 Query 116714 TGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGC 116772 |||||| | ||| || | || || ||||| || | ||| |||| || || || Sbjct 63452 TGGGAGTCACTT-AAGGTTGGGGAACGTCATTTTATATCATATGTGTTGGCATTCTTTGC 63394 Query 116773 CGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGT 116832 || || || || || || || || | | || || || ||| ||||| ||| | Sbjct 63393 GGCGAGTGATGGAATAGTTCTAGAAAACTTACTGGAACGCTTTAGTCAAGAGGTACAGAT 63334 Query 116833 GGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAAT 116892 | |||| || || || || || | ||||| || || ||||| | || || ||||| Sbjct 63333 CCCGGAGGTTCGCTGTTTTTATGGGATGCAGATAGCTATCGAGAATATTCATTCTGAAAT 63274 Query 116893 GTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTT-TGTTGA 116951 ||| || || ||||| ||||| | || | || ||| | || | || | Sbjct 63273 GTACTCTCTACTAATCGATACGTATATCAAAGACTCTAAAGA-AAGAGACTTTCTTTTCA 63215 Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 | || || | | | || || | || || | ||||| || ||||| | Sbjct 63214 ATGCTATAAGCAACCTAACTTGTGTAGCGAAAAAAGCTCAATGGGCATTGGATTGGATTG 63155 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 | || | | || | || ||| |||| ||||| || || || || || || | Sbjct 63154 GTGATTCTAAGTCTACGTTTGCAGAACGCTTGGTTGCCTTTGCAGCAGTAGAAGGAGTTT 63095 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 | || || ||||| ||||| || ||||||||||| ||||| || || || ||||| || Sbjct 63094 TTTTCTCCGGCAGCTTCGCGGCTATATTTTGGCTGAAGAAGCGAGGACTTATGCCTGGAT 63035 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 || | || || || ||| | ||| || ||||| || | ||||| ||||| || ||| Sbjct 63034 TGTCCTTTAGTAATGAGTTAATCAGTAGAGACGAAGGATTACATTGTGACTTCGCTTGTC 62975 Query 117192 TGCTGTTCAAGCA 117204 | ||||| ||||| Sbjct 62974 TTCTGTTTAAGCA 62962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515057884868480