Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4124 131 3e-25 seq3731 116 6e-21 seq11996 89.7 8e-13 seq11308 84.2 3e-11 >seq4124 Length=298687 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || || || || || || | ||| |||| | | | Sbjct 14048 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13989 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| |||||| ||||||||||||||||| || ||||| ||| Sbjct 13988 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 13929 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || ||||| || || ||| |||| || ||| || || || Sbjct 13928 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 13869 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || |||||||| || | ||| | ||| |||| |||||||| Sbjct 13868 ATTCAGAAGGAGTCAACTTTACACCTTGTTCTCCGTCTACGTGGTGGTAT 13819 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || || || || || || | ||| |||| | | | Sbjct 14276 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACAATCACATTGGAGGTTGAGCCTAGT 14217 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| |||||| ||||||||||||||||| || ||||| ||| Sbjct 14216 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14157 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || ||||| || || ||| |||| || ||| || || || Sbjct 14156 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14097 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || |||||||| || | ||| | ||| |||| |||||||| Sbjct 14096 ATTCAGAAGGAGTCAACTTTACACCTTGTTCTCCGTCTACGTGGTGGTAT 14047 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || || || || || || | ||| |||| | | | Sbjct 14504 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 14445 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||| ||||||||||||||||| || ||||| ||| Sbjct 14444 GACACGATTGAGAATGTGAAGGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14385 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || ||||| || || ||| |||| || ||| || || || Sbjct 14384 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 14325 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || |||||||| || | ||| | ||| |||| |||||||| Sbjct 14324 ATTCAGAAGGAGTCAACTTTACACCTTGTTCTCCGTCTACGTGGTGGTAT 14275 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || || || || || || | ||| |||| | | | Sbjct 13820 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13761 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||||||||||||||||||| || ||||| ||| Sbjct 13760 GACACGATTGAGAATGTGAAGGCGAAAATTCAAGATAAAGAAGGTATTCCTCCTGACCAA 13701 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || ||||| || || ||| |||| || ||| || || || Sbjct 13700 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAAC 13641 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| || || |||||||| || | ||| | ||| | || ||||| Sbjct 13640 ATTCAGAAGGAGTCAACTTTACACCTTGTTCTTCGTCTTCGTGGTGG 13594 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| | || || || || || || | ||| |||| | | Sbjct 14733 AATGCAGATTTTCGTTAAGACTTTGACGGGAAAGACGATTACGTTGGAGGTTGAGCCTAG 14674 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| |||||| ||||||||||||||||| || ||||| || Sbjct 14673 TGACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCA 14614 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || ||||| || || ||| |||| || ||| || || || Sbjct 14613 ACAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAA 14554 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || ||||| || | ||| | ||| |||| |||||||| Sbjct 14553 CATTCAGAAGGAGTCTACTTTACACCTTGTTCTCCGTCTACGTGGTGGTAT 14503 >seq3731 Length=1156867 Score = 116 bits (128), Expect = 6e-21 Identities = 167/232 (72%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || ||||| || || ||||||||||| | || |||| | | Sbjct 1054527 ATGCAGATTTTTGTGAAAACACTTACGGGGAAAACTATAACGCTTGAAGTTGAGCCTGCT 1054586 Query 124599 GATACAATTTCTA-ATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| | |||| | ||||| ||||||||||| ||||| ||||| ||||| Sbjct 1054587 GATACAATTGAAGCAGTTAANGCT-AAAATCCAAGATAAAGAGGGTATCCCACCAGATCA 1054645 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | ||||||||||| || |||||| | || ||| | |||| | || ||||| Sbjct 1054646 ACAACGTCTTATTTTTGCTGGCAAACAACTGGAAGATGGAAGAACCGTCTCTGACTATAA 1054705 Query 124718 TATTCAAAAAGAATCAACTTTGCAT-TTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||||| || | ||| |||||| | || | || || ||||| Sbjct 1054706 CATACAGTAAGAATCTACACTTCATCTTGGTTCTTCGACTTCGTGGGGGTAT 1054757 >seq11996 Length=10337 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAG-ACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 ||||||||| ||| | ||| ||| | | || || | || || | ||| |||| | | Sbjct 10125 AATGCAAATCTTTGTGAAGCACATTGCCGGGGAAGCCAATCACATTGGAGGTTGAGCCTA 10184 Query 124597 ATG-ATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || | || ||| ||| | ||| |||||||||||||||||||||||| || ||||| Sbjct 10185 GTGCACACGATTGAGAATGTGAAAGCGAAAATTCAAGATAAAGAAGGTATTCCTCCTGAC 10244 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||| | | || || || || | ||| || || ||| |||| || ||| || || Sbjct 10245 CAACAACGTTTGATATTCGCTGGTACACAGTTGGAAGATGGTCGTACGTTATCTGACTAC 10304 Query 124716 AATATTCAAAAAGAATCAACTTTGCA 124741 || | ||| || || || ||||| || Sbjct 10305 AACACTCAGAAGGAGTCTACTTTACA 10330 >seq11308 Length=25988 Score = 84.2 bits (92), Expect = 3e-11 Identities = 80/100 (80%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 205689 TTGATCAAATCCTTGATTTGTATAATTTGTA-TCCATATCAATATATTTAGCACCAAAAT 205747 |||||||| ||||||| ||||||| || | || ||| ||||||| || ||| || Sbjct 1573 TTGATCAACTCCTTGACCAGTATAATCAGTTCTGCA-ATCTATATATTCCGCTCCACTAT 1515 Query 205748 GACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTC 205787 ||||||| ||||||||||||| |||||| | ||||||||| Sbjct 1514 GACGCCACTGAAAACCATAAATTGGACCAAGATCACCTTC 1475 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 205384 TGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTA 205443 ||||| ||| |||||||||| ||||||| | || | |||||| |||||||| | Sbjct 4154 TGATTTGAATAAATATGTGCATCACCAATAGTGTGCACAAATTCGCCAGGTTTTAAGCCA 4095 Query 205444 GTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCT 205503 |||| ||| |||||||||||||| || ||| ||| || || | ||| || |||| || Sbjct 4094 GTTACATGAGCAATCATATAAGTTAACAAAGCATAGCTTGCGATATTGAACGGTATGCCA 4035 Query 205504 AAACCC 205509 | |||| Sbjct 4034 AGACCC 4029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755219466726400