Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21]
25,048 sequences; 402,743,189 total letters
Query= NC_002501.1
Length=26163
Score E
Sequences producing significant alignments: (Bits) Value
seq16058 138 2e-28
>seq16058
Length=1913
Score = 138 bits (152), Expect = 2e-28
Identities = 478/737 (65%), Gaps = 19/737 (3%)
Strand=Plus/Plus
Query 15069 ATGGATAATGTCAACCCTTTTAATCATCATAAAAACAGGGGTTTAAAATACCGGTCTGAA 15128
||||| ||||| || || ||||| || || || || || ||||||||
Sbjct 105 ATGGACAATGTGAATCCATTTAACCACCACCGGAATGCTGGCCTACGCTACCGGTCCATG 164
Query 15129 CTGCTGGGCAATGGTAGAATTGCAAAATTTCACATTCAAGTGCCCCAGAAGTTCTTTGCT 15188
|| ||||||||||| | || || ||||| |||||||| || || |||||||||
Sbjct 165 CTTCTGGGCAATGGCCGTTATGTGCCTTTCCACATACAAGTGCCTCAAAAATTCTTTGCT 224
Query 15189 ATTAAGAAACTTCTCTTATTGCCAGGGACCTACACGTATGAGTGGTGGTTTAGAAAGGAC 15248
| ||||| || || | | || || ||||||| ||||||||| || |||||||
Sbjct 225 GTCAAGAACCTACTTCTTCTACCTGGCTCCTACACCTATGAGTGGAACTTCAGAAAGGGT 284
Query 15249 CCAAACATGGTGTTACAGAGTTCTCTAGGTAATGATTTAAGACTAGATGGTGC-AACAAT 15307
|||||||| | || ||||| || || ||||| | ||| ||||||||| ||||
Sbjct 285 GTGAACATGGTCCTGCAAAGTTCCCTTGGAAATGACCTCAGAACAGATGGTGCTAACA-- 342
Query 15308 TCAGTA-CACATCAATTAATCTGTTTGCTAGTTTTTTCCCCATGGATCATGCAACTTGCA 15366
| ||| ||| || || || | ||| | || |||||||||| ||| ||||
Sbjct 343 TAAGTTTCACCAGCATCAACCTCTATGCCACCTTCTTCCCCATGGCTCA--CAACACCGC 400
Query 15367 ATGATCTCATTTTA---ATGCTAAGAAATGAGACAAATGATCAGTCCTTTATGGACTACA 15423
| | ||| || | ||||| | || || || ||||||||||| || | ||||||
Sbjct 401 TTCAACTC-TTGAAGCCATGCTGCGCAACGATACCAATGATCAGTCATTCAACGACTACC 459
Query 15424 T---GGGAGGTAAAAACAATTTGTATGTTGTGCCTCCCAACACAGAGAACTTGCAAATTG 15480
| | || | |||| | || | ||| |||| || ||| | | ||||
Sbjct 460 TCTCTGCAGCT---AACATGCTTTACCCCATCCCTGCCAATGCAACCAACATTCCAATTT 516
Query 15481 AAATACCTAGCCGTACTTGGGAAGCTTTCAGAGGGTGGAGTTTTAACCGACTGAAAACAG 15540
|| || || | |||| ||| ||||| || ||| || | | |||| |||||
Sbjct 517 CCATCCCATCTCGCAACTGGGCAGCCTTCAGGGGCTGGTCCTTCACCAGACTCAAAACCA 576
Query 15541 CTGAAACACCCTCAGTGTGGTCTACATACGATGTCAATTTCAAGTATTCTGGCAGCATCC 15600
|| || || || | | || | |||| | | ||| |||||||| || |
Sbjct 577 AGGAGACTCCATCTCTTGGATCAGGGTTCGATCCCTACTTCGTTTATTCTGGATCTATTC 636
Query 15601 CGTATCTGGATGGAAGTTTTTATTTGAGTCACACTTTTAAAAATATAGCTATCAATTTTG 15660
| || |||||||| | |||||| | | |||||||| || || | |||| ||||
Sbjct 637 CCTACCTGGATGGCACTTTTTACCTTAACCACACTTTCAAGAAGGGCTCCATCATGTTTG 696
Query 15661 ATTCTGCTGTGCCATGGCCTGGTAATGACCGTATGTTAGTTCCAAATTATTTTGAGATTA 15720
| || | || |||||||| |||||| | |||| ||||||| | ||||| || |
Sbjct 697 ACTCCTCAGTCAGCTGGCCTGGCAATGACAGGCTGTTGTCTCCAAATGAGTTTGAAATCA 756
Query 15721 AAAGAACAGGCCCGGATTCTGAAGGCTATTGTGTGGCTCAAAGTAATATGACAAAAGATT 15780
| | || | |||| ||||| || |||||| ||| | || ||||| ||||| |
Sbjct 757 AGCGCACTG---TGGATGGGGAAGGATACAATGTGGCCCAATGCAACATGACCAAAGACT 813
Query 15781 GGTTCCTGGTCCAAATG 15797
|||||||||| || |||
Sbjct 814 GGTTCCTGGTTCAGATG 830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 83578987050224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |