Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_002501.1 Length=26163 Score E Sequences producing significant alignments: (Bits) Value seq16058 138 2e-28 >seq16058 Length=1913 Score = 138 bits (152), Expect = 2e-28 Identities = 478/737 (65%), Gaps = 19/737 (3%) Strand=Plus/Plus Query 15069 ATGGATAATGTCAACCCTTTTAATCATCATAAAAACAGGGGTTTAAAATACCGGTCTGAA 15128 ||||| ||||| || || ||||| || || || || || |||||||| Sbjct 105 ATGGACAATGTGAATCCATTTAACCACCACCGGAATGCTGGCCTACGCTACCGGTCCATG 164 Query 15129 CTGCTGGGCAATGGTAGAATTGCAAAATTTCACATTCAAGTGCCCCAGAAGTTCTTTGCT 15188 || ||||||||||| | || || ||||| |||||||| || || ||||||||| Sbjct 165 CTTCTGGGCAATGGCCGTTATGTGCCTTTCCACATACAAGTGCCTCAAAAATTCTTTGCT 224 Query 15189 ATTAAGAAACTTCTCTTATTGCCAGGGACCTACACGTATGAGTGGTGGTTTAGAAAGGAC 15248 | ||||| || || | | || || ||||||| ||||||||| || ||||||| Sbjct 225 GTCAAGAACCTACTTCTTCTACCTGGCTCCTACACCTATGAGTGGAACTTCAGAAAGGGT 284 Query 15249 CCAAACATGGTGTTACAGAGTTCTCTAGGTAATGATTTAAGACTAGATGGTGC-AACAAT 15307 |||||||| | || ||||| || || ||||| | ||| ||||||||| |||| Sbjct 285 GTGAACATGGTCCTGCAAAGTTCCCTTGGAAATGACCTCAGAACAGATGGTGCTAACA-- 342 Query 15308 TCAGTA-CACATCAATTAATCTGTTTGCTAGTTTTTTCCCCATGGATCATGCAACTTGCA 15366 | ||| ||| || || || | ||| | || |||||||||| ||| |||| Sbjct 343 TAAGTTTCACCAGCATCAACCTCTATGCCACCTTCTTCCCCATGGCTCA--CAACACCGC 400 Query 15367 ATGATCTCATTTTA---ATGCTAAGAAATGAGACAAATGATCAGTCCTTTATGGACTACA 15423 | | ||| || | ||||| | || || || ||||||||||| || | |||||| Sbjct 401 TTCAACTC-TTGAAGCCATGCTGCGCAACGATACCAATGATCAGTCATTCAACGACTACC 459 Query 15424 T---GGGAGGTAAAAACAATTTGTATGTTGTGCCTCCCAACACAGAGAACTTGCAAATTG 15480 | | || | |||| | || | ||| |||| || ||| | | |||| Sbjct 460 TCTCTGCAGCT---AACATGCTTTACCCCATCCCTGCCAATGCAACCAACATTCCAATTT 516 Query 15481 AAATACCTAGCCGTACTTGGGAAGCTTTCAGAGGGTGGAGTTTTAACCGACTGAAAACAG 15540 || || || | |||| ||| ||||| || ||| || | | |||| ||||| Sbjct 517 CCATCCCATCTCGCAACTGGGCAGCCTTCAGGGGCTGGTCCTTCACCAGACTCAAAACCA 576 Query 15541 CTGAAACACCCTCAGTGTGGTCTACATACGATGTCAATTTCAAGTATTCTGGCAGCATCC 15600 || || || || | | || | |||| | | ||| |||||||| || | Sbjct 577 AGGAGACTCCATCTCTTGGATCAGGGTTCGATCCCTACTTCGTTTATTCTGGATCTATTC 636 Query 15601 CGTATCTGGATGGAAGTTTTTATTTGAGTCACACTTTTAAAAATATAGCTATCAATTTTG 15660 | || |||||||| | |||||| | | |||||||| || || | |||| |||| Sbjct 637 CCTACCTGGATGGCACTTTTTACCTTAACCACACTTTCAAGAAGGGCTCCATCATGTTTG 696 Query 15661 ATTCTGCTGTGCCATGGCCTGGTAATGACCGTATGTTAGTTCCAAATTATTTTGAGATTA 15720 | || | || |||||||| |||||| | |||| ||||||| | ||||| || | Sbjct 697 ACTCCTCAGTCAGCTGGCCTGGCAATGACAGGCTGTTGTCTCCAAATGAGTTTGAAATCA 756 Query 15721 AAAGAACAGGCCCGGATTCTGAAGGCTATTGTGTGGCTCAAAGTAATATGACAAAAGATT 15780 | | || | |||| ||||| || |||||| ||| | || ||||| ||||| | Sbjct 757 AGCGCACTG---TGGATGGGGAAGGATACAATGTGGCCCAATGCAACATGACCAAAGACT 813 Query 15781 GGTTCCTGGTCCAAATG 15797 |||||||||| || ||| Sbjct 814 GGTTCCTGGTTCAGATG 830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83578987050224