Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5310 262 4e-65 >seq5310 Length=161011 Score = 262 bits (290), Expect = 4e-65 Identities = 582/873 (67%), Gaps = 50/873 (6%) Strand=Plus/Plus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||||||||| ||| | ||||||||| || || || || ||||||| || |||||||| Sbjct 62654 TTGATATTCACCAACCCGCTTTTCAAAAAAGTTCGTCTTGCCTTCTATGGATATATTTTC 62713 Query 16006 CATAAAATCAAAAGGATTTTTTGA-------------------ACAATAGTA-------- 16038 |||||||||||||||||| | || ||||| | Sbjct 62714 CATAAAATCAAAAGGATTATCAGAGTGATAAATCTAAACAGAAACAATTAAAACGAAAAC 62773 Query 16039 -------TTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACT 16091 ||| ||| | || | ||| | || | | ||| || | ||||| ||||||| Sbjct 62774 CACAAACTTTTTCGTAACCGAGTTCAACCAGCAGCCGATCAGCAATGAATTCAATATACT 62833 Query 16092 GTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAt 16151 | ||||| | || |||||||| ||||| | || || | ||||| | | ||| | Sbjct 62834 GGCACATTAGCTTGCAATTCATTCCAATTAAACTGACTGGCAAGGCTTCAGACAGAAACT 62893 Query 16152 ttttttCTATATTAACCGCTTCAATGATTATAT-CTCTTACT---ACACTATTTAACGGA 16207 || ||| || ||||| || | || || ||| || || ||| | | Sbjct 62894 CTTGTTCGATTAGCACCGCCTCCTTCATAATCGACTCA-ACGCGAACCCTA------GAA 62946 Query 16208 GGGTTT--AATAA-GTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCC 16264 || ||| ||||| ||| ||||||| | |||||| || |||||||| ||||||||||| Sbjct 62947 GGCTTTTTAATAATGTGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCT 63006 Query 16265 CTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAA 16324 ||||| |||||||| || ||| | | || ||||| |||||||| || || | |||| Sbjct 63007 CTACTGATTAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAA 63066 Query 16325 AATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAAT 16384 |||||||| || || || || || || | ||||| ||||| ||||| |||||||| Sbjct 63067 AATATAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAG 63126 Query 16385 CGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgt 16444 || || | |||| || | | ||||| | ||||| | ||||||| Sbjct 63127 CGTTCTGCAAACGTAGACTTAGAATCACCAATCCAATCCAATGCCCATTGAGCTTTTTTC 63186 Query 16445 ttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAA 16504 ||||| | | ||| ||| ||||| || | | | | | ||||||| ||| Sbjct 63187 GCTACACAAGTTAGGTTGCTTATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTTG 63246 Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 ||||| ||||| ||||||| | |||||||| |||||||||||||| || |||||||| Sbjct 63247 ATATACGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTGC 63306 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAA 16623 | |||||||| || | | | || | || ||||| || || |||| | || | | ||| Sbjct 63307 ATCCCATAAAAACAGCGAACCTCCGGGATCTGTACCTCTTGACTAAAGCGTTCCAG-TAA 63365 Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683 |||||| |||||||||||| || || ||||| || || | | | | ||||||| Sbjct 63366 GTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAAATG 63425 Query 16684 tttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTC 16743 ||| | | |||| ||| | | || ||||| || ||||| |||||||| Sbjct 63426 ACGTTCCCCAACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTCTTC 63485 Query 16744 TACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 ||||||||| |||||||| || |||||||| || Sbjct 63486 TACAGTCCAGAAAGAAGCCACCGCCTTTTTGTA 63518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462367187492800