Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_002685.2 Length=31301 Score E Sequences producing significant alignments: (Bits) Value seq16058 89.7 1e-13 >seq16058 Length=1913 Score = 89.7 bits (98), Expect = 1e-13 Identities = 245/371 (66%), Gaps = 6/371 (2%) Strand=Plus/Plus Query 16072 AATATTGGAGCCAGGTGGTCTTTAGATATTATGGATACAATTAACCCTTTTAATCATCAT 16131 || ||||| |||||||||||| | || ||||| | | || || ||||| || || Sbjct 75 AACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCAC 134 Query 16132 AGAAATACAGGCCTTAAGTATAGATCACAGTTGTTAGGAAATGGTAGATTCAGTAGATTT 16191 | ||| | ||||| || | || | | | || ||||| | || || ||| Sbjct 135 CGGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCG-TTATGTGCCTTT 193 Query 16192 -CACATTCAAGTTCCACAGAAGTTTTTTGCAATTAAAAACTTACTTCTGCTACCTGGAAC 16250 ||||| ||||| || || || || ||||| | || ||| ||||||| |||||||| | Sbjct 194 CCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTC 253 Query 16251 TTATAATTATGAGTGGTATTTTAGGAAAGATCCAAATATGATTTTTCAATCTTCAATTGG 16310 || | ||||||||| | || || || | | || ||| | | ||| ||| |||| Sbjct 254 CTACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTCCCTTGG 313 Query 16311 AAATGATTTAAGAGCAGATGGAGCATATATAAATTATTCCAATATAAATCTATATGTTTC 16370 |||||| | ||| ||||||| || | |||| || ||| || || || |||| | Sbjct 314 AAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCATCAACCTCTATGCCAC 373 Query 16371 TTTTTTCCCAATGAATTATGACACTG--TCAGCGAACTTGAATTGATGCTAAGAAATGCT 16428 || ||||| ||| | | |||| | ||| | |||||| ||||| | || | | Sbjct 374 CTTCTTCCCCATGGCTCACAACACCGCTTCAAC--TCTTGAAGCCATGCTGCGCAACGAT 431 Query 16429 ACTAATGATCA 16439 || |||||||| Sbjct 432 ACCAATGATCA 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100011843126288