Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq4124 120 2e-22 seq4755 116 3e-21 seq11996 86.0 5e-12 >seq4124 Length=298687 Score = 120 bits (132), Expect = 2e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||||||||||||||||| | | | | ||| | || |||| ||||| || |||| Sbjct 13629 CTCCTTCTGAATGTTGTAGTCAGATAACGTA-CGACCATCTTCCAACTGTTTACCAGCGA 13687 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 ||||||| || |||||||| ||||| | ||| || || || |||||| ||| || Sbjct 13688 ATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGAATTTTCGCCTTCACAT 13747 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | |||| | | ||| ||||||| || |||||||| ||||||| ||||||| Sbjct 13748 TCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCA 13807 Query 45324 CAAAGATTTGCAT 45336 ||||||| ||||| Sbjct 13808 CAAAGATCTGCAT 13820 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||||||||||||||||| | | | | ||| | || |||| ||||| || |||| Sbjct 14313 CTCCTTCTGAATGTTGTAGTCAGATAACGTA-CGACCATCTTCCAACTGTTTACCAGCGA 14371 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 ||||||| || |||||||| ||||| | ||| || || || ||||| ||| || Sbjct 14372 ATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCCTTCACAT 14431 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | |||| | | ||| ||||||| || |||||||| ||||||| ||||||| Sbjct 14432 TCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCA 14491 Query 45324 CAAAGATTTGCAT 45336 ||||||| ||||| Sbjct 14492 CAAAGATCTGCAT 14504 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||||||||||||||||| | | | | ||| | || |||| ||||| || |||| Sbjct 13857 CTCCTTCTGAATGTTGTAGTCAGATAACGTA-CGACCATCTTCCAACTGTTTACCAGCGA 13915 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 ||||||| || |||||||| ||||| | ||| || || || ||||| || || Sbjct 13916 ATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCACAT 13975 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | |||| | | ||| ||||||| || |||||||| ||||||| ||||||| Sbjct 13976 TCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCA 14035 Query 45324 CAAAGATTTGCAT 45336 ||||||| ||||| Sbjct 14036 CAAAGATCTGCAT 14048 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||||||||||||||||| | | | | ||| | || |||| ||||| || |||| Sbjct 14085 CTCCTTCTGAATGTTGTAGTCAGATAACGTA-CGACCATCTTCCAACTGTTTACCAGCGA 14143 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 ||||||| || |||||||| ||||| | ||| || || || ||||| || || Sbjct 14144 ATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCACAT 14203 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | |||| | | ||| ||||||| || || ||||| ||||||| ||||||| Sbjct 14204 TCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATTGTCTTCCCCGTCAATGTCTTCA 14263 Query 45324 CAAAGATTTGCAT 45336 ||||||| ||||| Sbjct 14264 CAAAGATCTGCAT 14276 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||||||||||||||||| | | | | ||| | || |||| ||||| || |||| Sbjct 14541 CTCCTTCTGAATGTTGTAGTCAGATAACGTA-CGACCATCTTCCAACTGTTTACCAGCGA 14599 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 ||||||| || |||||||| ||||| | ||| || || || ||||| || || Sbjct 14600 ATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCACAT 14659 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | |||| | | ||| ||||||| ||||||||||| ||||||| |||||| | Sbjct 14660 TCTCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCCGTCAAAGTCTTAA 14719 Query 45324 CAAAGATTTGCAT 45336 | || || ||||| Sbjct 14720 CGAAAATCTGCAT 14732 >seq4755 Length=318840 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| | || ||| ||||||||||| || |||||| || ||||||||||| | Sbjct 280589 CCACCTCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 280530 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | |||| | || ||||| || || || || || || || || ||||| |||||||| Sbjct 280529 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 280470 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||| ||| || || || || | | | |||| | ||| || Sbjct 280469 ATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACT 280410 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||||||||| || ||||||||||||||||| || ||||| Sbjct 280409 TCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 >seq11996 Length=10337 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 |||||||||| |||||||||| | | | | ||| | || |||| ||| | || |||| Sbjct 10319 CTCCTTCTGAGTGTTGTAGTCAGATAACGTA-CGACCATCTTCCAACTGTGTACCAGCGA 10261 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 ||||||| || |||||||| ||||| | ||| || || || |||||| || || Sbjct 10260 ATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGAATTTTCGCTTTCACAT 10201 Query 45264 CCGCCACGCTGT-CCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGT-CTT 45321 | | | ||| | | | ||| ||||||| || || | ||| |||| || || ||| Sbjct 10200 TCTCAATCGTGTGCACTAGGCTCAACCTCCAATGTGATTGGCTTCCCCGGCAATGTGCTT 10141 Query 45322 CACAAAGATTTGCATGTT 45339 ||||||||||||||| || Sbjct 10140 CACAAAGATTTGCATTTT 10123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394954594406008