Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq5310 199 4e-46 >seq5310 Length=161011 Score = 199 bits (220), Expect = 4e-46 Identities = 594/915 (65%), Gaps = 50/915 (5%) Strand=Plus/Plus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||||||||| ||| | |||||||| ||||| || || ||||| | ||||||||||| Sbjct 62654 TTGATATTCACCAACCCGCTTTTCAAAAAAGTTCGTCTTGCCTTCTATGGATATATTTTC 62713 Query 13975 CATAAAATCAAATGGATT--------------TGTTGACATAAACA-------------- 14006 |||||||||||| ||||| | | ||| ||||| Sbjct 62714 CATAAAATCAAAAGGATTATCAGAGTGATAAATCTAAACAGAAACAATTAAAACGAAAAC 62773 Query 14007 ------CTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATT 14060 |||| || |||| ||||| | || | | ||| |||||||| |||||||| | Sbjct 62774 CACAAACTTTTTCGTAACCGAGTTCAACCAGCAGCCGATCAGCAATGAATTCAATATACT 62833 Query 14061 GAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATT 14120 | |||||| | |||||||| || |||| | || || | | | | ||| | Sbjct 62834 GGCACATTAGCTTGCAATTCATTCCAATTAAACTGACTGGCAAGGCTTCAGACAGAAACT 62893 Query 14121 CTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGAT 14180 ||| ||| || ||| ||||| || ||||| | || | ||||||| | Sbjct 62894 CTTGTTCGATTAGCACCGCCTCCTTCATAATCGACTCAACGCGAACCCTAGAAGGC---T 62950 Query 14181 ATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTAC 14237 ||| | | || ||||| | | ||| || || |||||||| | || || ||||||| Sbjct 62951 TTTTAATAATGTGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTCTAC 63010 Query 14238 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 14297 | || | || || ||| | ||||| ||||| | |||||| || || | |||||||| Sbjct 63011 TGATTAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATA 63070 Query 14298 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14357 | || ||||| ||||| || || | ||| || ||||| ||||| || | || |||| Sbjct 63071 TAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTT 63130 Query 14358 CTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14417 || |||||| | || | ||||| | ||||||| || |||||| | Sbjct 63131 CTGCAAACGTAGACTTAGAATCACCAATCCAATCCAATGCCCATTGAGCTTTTTTCGCTA 63190 Query 14418 TAAAATCCA--TTGTTTCAATAGCATTAAATA-AATGT-TCCTTCTCTTTAGTACTTGAA 14473 | || | ||| || |||||||| || | || || || |||| | ||| |||| Sbjct 63191 CACAAGTTAGGTTGCTT--ATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTTGAT 63248 Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 || | ||||| || |||| ||||||||||| || || || || ||||||||||| Sbjct 63249 AT--ACGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTGC 63306 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAA 14592 | ||||||||||| | | | || | |||||||| ||| | ||| | ||| || Sbjct 63307 ATCCCATAAAAACAGCGAACCTCCGGGATCTGTACCTCTTGACT-AAAGCGTTCCAGTAA 63365 Query 14593 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14652 ||||| |||||| |||||||| || ||||| |||||||| | | | ||||| | Sbjct 63366 GTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAAATG 63425 Query 14653 TTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATC 14712 | || || | ||| | ||||| | || || || || | ||| || || || Sbjct 63426 ACGTTCCCCAACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTCTTC 63485 Query 14713 AACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATAT 14772 || ||||| ||| ||| || || ||||| || | ||| || || | |||| ||| Sbjct 63486 TACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTCTAT 63545 Query 14773 AGGAAAAACTACAAA 14787 || |||| ||||| Sbjct 63546 GGGGAAAAGAACAAA 63560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482194577592640