Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5310 131 1e-25 seq4755 89.7 5e-13 seq4124 86.0 6e-12 >seq5310 Length=161011 Score = 131 bits (144), Expect = 1e-25 Identities = 450/696 (65%), Gaps = 8/696 (1%) Strand=Plus/Minus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 ||||| | || || || ||||||| || || ||| | | ||||||||||| | || Sbjct 63560 TTTGTTCTTTTCCCCATAGAATATCATGATATCTGGCATTTCTACAAAAAGGCGGTGGCT 63501 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTC 57659 || || ||||| || ||||| || || |||| || || | | ||||||| || || Sbjct 63500 TCTTTCTGGACTGTAGAAGAGGTGGATTTGTCCAAAGACTTCACACATTGGGAGTCACTT 63441 Query 57660 AAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGT 57719 || | || | ||||||| | | |||||||| || || || || ||||| Sbjct 63440 AAGGTTGGGGAACGTCATTTTATATCATATGTGTTGGCATTCTTTGCGGCGAGTGATGGA 63381 Query 57720 ATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGA 57779 || ||| || || || | ||| | ||| ||||| || || | |||||| | Sbjct 63380 ATAGTTCTAGAAAACTTACTGGAACGCTTTAGTCAAGAGGTACAGATCCCGGAGGTTCGC 63321 Query 57780 TGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTC 57839 || ||||| || | || | || || || || | ||||| |||||||| || ||||| Sbjct 63320 TGTTTTTATGGGATGCAGATAGCTATCGAGAATATTCATTCTGAAATGTACTCTCTACTA 63261 Query 57840 ATCGATACGTACGTGAAGGAC---AACGACGAGAAACGTAGACTGTTCAACGCGAT-CGA 57895 ||||||||||| | || ||| || || ||| || | || ||||| || || | Sbjct 63260 ATCGATACGTATATCAAAGACTCTAAAGA-AAGAGACTT--TCTTTTCAATGCTATAAGC 63204 Query 57896 AACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCAC 57955 ||| | | | | || || || || | ||| || | | ||||| | | Sbjct 63203 AACCTAACTTGTG-TAGCGAAAAAAGCTCAATGGGCATTGGATTGGATTGGTGATTCTAA 63145 Query 57956 GGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGG 58015 | | ||||| || || | | | || || || || || ||||| | || || || || Sbjct 63144 GTCTACGTTTGCAGAACGCTTGGTTGCCTTTGCAGCAGTAGAAGGAGTTTTTTTCTCCGG 63085 Query 58016 CAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAG 58075 |||||| ||||| ||||||||| ||||||| || || || ||||| || || | ||||| Sbjct 63084 CAGCTTCGCGGCTATATTTTGGCTGAAGAAGCGAGGACTTATGCCTGGATTGTCCTTTAG 63025 Query 58076 CAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTC 58135 || ||||| || | ||||| || | ||| ||| || || || || ||| Sbjct 63024 TAATGAGTTAATCAGTAGAGACGAAGGATTACATTGTGACTTCGCTTGTCTTCTGTTTAA 62965 Query 58136 TCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGC 58195 |||||| | || || || | ||| |||| | | ||||| | |||||||| Sbjct 62964 GCACATTATTAAAAAGCCTTCTAGGGTTCGCGTTGAGTCGATTATGAAGGAGGCGGTGCT 62905 Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGT 58231 |||||| | |||||| | | |||||| | || || Sbjct 62904 AATCGAACAAGAGTTTCTGTCTGAAGCCTTGCCAGT 62869 >seq4755 Length=318840 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || |||||||||||||| || || ||||| || | || ||||| || Sbjct 279679 ATGCAGATATTTGTAAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 279738 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || ||| | || ||| ||||| || | || ||||| || Sbjct 279739 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGGATTCCTCCCGATCAA 279798 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| |||| || ||||| || ||| |||| || | ||| || || || ||| Sbjct 279799 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 279858 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || |||||||| || |||| ||| | || | || |||| Sbjct 279859 ATCCAAAAGGAGTCGACTCTACACTTGGTGCTTCGTCTTCGTGGTGGTA 279907 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| || || ||||| || | || ||||| || Sbjct 279907 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 279966 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || ||| | || ||| ||||| || | || ||||| || Sbjct 279967 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280026 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| |||| || ||||| || ||| |||| || | ||| || || || ||| Sbjct 280027 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280086 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || |||||||| || |||| ||| | || | || |||| Sbjct 280087 ATCCAAAAGGAGTCGACTCTACACTTGGTGCTTCGTCTTCGTGGTGGTA 280135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| || || ||||| || | || ||||| || Sbjct 280135 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280194 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || ||| | || ||| ||||| || | || ||||| || Sbjct 280195 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280254 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| |||| || ||||| || ||| |||| || | ||| || || || ||| Sbjct 280255 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280314 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || |||||||| || |||| ||| | || | || |||| Sbjct 280315 ATCCAAAAGGAGTCGACTCTACACTTGGTGCTTCGTCTTCGTGGTGGTA 280363 >seq4124 Length=298687 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| |||| || || ||||| || | || ||||| || Sbjct 14732 ATGCAGATTTTCGTTAAGACTTTGACGGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 14673 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| || ||| || || ||||| | || || ||||| Sbjct 14672 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14613 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||| | ||||||||||| |||||||||||||| Sbjct 14612 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGA 14578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445626830540160