Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4842 98.7 2e-15 >seq4842 Length=69696 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || |||||| | || || || || || ||||| ||||| ||||||||||| || ||| Sbjct 44595 CCCCCAGCATTTTTAGATATAATGGCACATTCCTTTAGAGTGTCATAAATACCTTCTATG 44654 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAA 94911 |||||||||| | | ||||||||| |||||||| ||| | ||||||| || Sbjct 44655 CTATCATCTTTCATAGTGATAAGGAAGCAACTTGAAAGTTGTGGTTTCGGTGTTCCAGAA 44714 Query 94912 TTAAACAGTGTGGGGGAAGCATGGGTAAA 94940 ||||| || || || |||||||| ||||| Sbjct 44715 TTAAAAAGAGTCGGTGAAGCATGTGTAAA 44743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989266415280840