Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5310 280 2e-70 seq4842 100 4e-16 seq4148 82.4 1e-10 >seq5310 Length=161011 Score = 280 bits (310), Expect = 2e-70 Identities = 450/641 (70%), Gaps = 8/641 (1%) Strand=Plus/Plus Query 33560 TAATAAA-TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAA 33618 |||||| || ||||||| | ||| ||||| || || || | || ||||||||||| | Sbjct 62954 TAATAATGTGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTCTACTGA 63013 Query 33619 TTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 33678 |||| || ||| ||| | | ||| ||||| || || ||||| || ||||||||||| | Sbjct 63014 TTAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATATAG 63073 Query 33679 AAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTC 33738 ||||| ||||| || || | |||||||||||| |||||||||| | | ||| Sbjct 63074 CCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTTCTG 63133 Query 33739 CATAACCGGCGCTG----TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33794 || ||| || ||| ||||| | ||||| | || || || |||| Sbjct 63134 CA-AACGTAGACTTAGAATCACCAATCCAATCCAATGCCCATTGAGCTTTTTTCGCTACA 63192 Query 33795 CAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATA 33853 |||| | ||| || || ||||| || ||| ||| | |||| ||| ||||| | ||| Sbjct 63193 CAAGTTAG-GTTGCTTATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTTGATATA 63251 Query 33854 AGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCC 33913 |||||||| | ||| |||||||| |||||||| || || || || ||||| | || Sbjct 63252 CGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTGCATCCC 63311 Query 33914 GTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTC 33973 || ||||| | | |||| | ||||| || ||| || ||| ||||| ||| ||||| Sbjct 63312 ATAAAAACAGCGAACCTCCGGGATCTGTACCTCTTGACTAAAGCGTTCCAGTAAGTTTTC 63371 Query 33974 ATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC 34033 |||||||||||||| || ||||| || ||||| |||| | |||||||| ||| Sbjct 63372 TAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAAATGACGTTC 63431 Query 34034 GTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGT 34093 | | ||| | ||||| ||| ||||| || | |||||| ||||| || || Sbjct 63432 CCCAACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTCTTCTACAGT 63491 Query 34094 CCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 ||| || || ||| | |||||||| || | || |||||| |||||||||| || ||||| Sbjct 63492 CCAGAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTCTATGGGGAA 63551 Query 34154 AATAACAAATCTATTTGGATTTGGTGCAAGGATAGGTTCCA 34194 || |||||| | | ||| |||||| ||| | ||||||| Sbjct 63552 AAGAACAAAACGGTGTGGGTTTGGTTTAAGCAAGGGTTCCA 63592 Score = 82.4 bits (90), Expect = 1e-10 Identities = 82/105 (78%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 33267 TCTT-CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 33325 |||| || |||||||||| || ||| |||||||| || || ||||| ||||| || Sbjct 62627 TCTTGCTCGAGACATAACACCAGCACGTTGATATTCACCAACCCGCTTTTCAAAAAAGTT 62686 Query 33326 AGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 || || ||||| | |||||||||||||| |||||||| ||||| Sbjct 62687 CGTCTTGCCTTCTATGGATATATTTTCCATAAAATCAAAAGGATT 62731 >seq4842 Length=69696 Score = 100 bits (110), Expect = 4e-16 Identities = 136/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || ||||| || ||||||| || | || ||| |||| |||||||| || ||| Sbjct 44589 CCAATACCCCCAGCATTTTTAGATATAATGGCACATTCCTTTAGAGTGTCATAAATACCT 44648 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGAGTAG 63663 |||||||||||||| |||| | | || || || || || | | |||| || || | Sbjct 44649 TCTATGCTATCATCTTTCATAGTGATAAGGAAGCAACTTGAAAGTTGTGGTTTCG-GT-G 44706 Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63723 |||| | |||||| | || || ||||| || ||||||||||||||||| | ||| || | Sbjct 44707 TTCCAGAATTAAAAAGAGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATTAGGTTAT 44766 Query 63724 ACGTCT 63729 | |||| Sbjct 44767 ATGTCT 44772 >seq4148 Length=337133 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 28710 TGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAATATGTGTATTAT 28769 ||||||| || ||||||||||| ||||| || || || ||||||||| |||| | ||| Sbjct 210394 TGACCTGTGTCAGTGATCTCCAGTCCATATTTGCACTACCTAAATAACTATGCATCGTAT 210453 Query 28770 CAGATATCCAAAATTTTGTATGAAGAACTCCTC 28802 || || ||| ||||| ||||| |||| ||||| Sbjct 210454 CAACTAACCATAATTTCGTATGCAGAATTCCTC 210486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629620404109440