Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5310 208 7e-49 seq4842 114 1e-20 >seq5310 Length=161011 Score = 208 bits (230), Expect = 7e-49 Identities = 507/757 (67%), Gaps = 17/757 (2%) Strand=Plus/Plus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || | |||||| |||||||| |||||| |||||||| || || | | || Sbjct 62811 ATCAGCAATGAATTCAATATACTGGCACATTAGCTTGCAATTCATTCCAATTAAACTGAC 62870 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGT 11583 || | || | | || |||||| | ||| || ||||| || | || |||||| Sbjct 62871 TGGCAAGGCTTCAGACAGAAACTCTTGTTCGATTAGCACCGCCTCCTTCATAATCGACTC 62930 Query 11584 TATAACTTCCTTAGATGGTGGATGTAATAAA-TGTTTAAACATTAAACACGCAAAATCAC 11642 | || |||| || | |||||| || ||||||| | ||| || || |||| Sbjct 62931 AACGCGAACCCTAGAAGGCTTTT-TAATAATGTGCTTAAACAGAAGACAAGCGAAGTCAC 62989 Query 11643 AATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATC 11702 ||||||| |||||||||||||| |||| |||||| ||| | ||||| ||||| | || Sbjct 62990 AATGTAATCCTTCGTCTCTACTGATTAACTCATTACTAAAGGACAATCCAGGCATAAGTC 63049 Query 11703 CTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAG 11762 |||| || || | |||||||||||| || || || || || || | ||| || || | Sbjct 63050 CTCGCTTCTTCAGCCAAAATATAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTG 63109 Query 11763 CTGCAAATGCTACTACTCTTTCTCCA----TATACCTTGTTGCTAGATATCCATTTTCTG 11818 ||||||| || || | | |||| || || || | | | | ||||| | Sbjct 63110 CTGCAAAGGCAACCAAGCGTTCTGCAAACGTAGACTTAGAATC-ACCAATCCAATCCAAT 63168 Query 11819 GCCCAATCAGCTTTCTTTTTTACGCA--TTCCATTGTTTCTATAGCGTT--AAATAAATG 11874 ||||| | |||||| || ||| || || ||| | |||||| || ||| ||| Sbjct 63169 GCCCATTGAGCTTTTTTCGCTACACAAGTTAGGTTGCT--TATAGCATTGAAAAGAAAGT 63226 Query 11875 CATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATG 11934 | | ||||| || ||| | | ||| ||||| |||| || | |||||||| ||||| Sbjct 63227 C--TCTTTCTTTAGAGTCTTTGATATACGTATCGATTAGTAGAGAGTACATTTCAGAATG 63284 Query 11935 AATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 |||||| || |||||||| || | ||||| ||||| || |||| | |||||| || Sbjct 63285 AATATTCTCGATAGCTATCTGCATCCCATAAAAACAGCGAACCTCCGGGATCTGTACCTC 63344 Query 11995 CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGC 12054 | ||| | |||| ||| || || || || |||||||| | ||||| ||||| Sbjct 63345 TTGACTAAAGCGTTCCAGTAAGTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAATGC 63404 Query 12055 TAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA-TCCCAATCATCTAAAT 12113 | | || | |||||| | ||| | |||| | | ||||||| || | Sbjct 63405 CAACACATATGATATAAAATGACGTTC-CCCAACCTTAAGTGACTCCCAATGTGTGAAGT 63463 Query 12114 CTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTT 12173 |||| || ||||| || ||||| || ||||| ||| ||||| | | ||| || | | Sbjct 63464 CTTTGGACAAATCCACCTCTTCTACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAAT 63523 Query 12174 TCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 ||||||||||||||| | || ||||||| ||| || Sbjct 63524 GCCAGATATCATGATATTCTATGGGGAAAAGAACAAA 63560 >seq4842 Length=69696 Score = 114 bits (126), Expect = 1e-20 Identities = 277/412 (67%), Gaps = 13/412 (3%) Strand=Plus/Plus Query 36870 GTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGA 36929 ||| ||||||||||| || | |||| | || | || | | | | || | | | || Sbjct 40526 GTAGAAATGCATACTTGTTATTTTTCCATAATTTGGTTGAGCAAGATGCAAATTAAGAGA 40585 Query 36930 TTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGA 36989 ||| || || || ||||| | | | | | |||||||| || | ||| |||||| Sbjct 40586 TTGGCTCTGGTCAATAAATGGGGCACGGCCTGCTGCCATATCAATAATCTTCCGTTGAGA 40645 Query 36990 TATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAA---ATCTAAATGTTG 37046 |||||||| || ||||| || | |||||| | | || || | ||||| |||||| Sbjct 40646 AATCTCCCACACTGTTTTGTACAAAGGTTTTAAAGTCTCGGGAATTCCATCTATATGTTG 40705 Query 37047 AATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCA--CATATTTCTA 37104 |||||| || | || || ||||| | | |||| || | |||| || | ||| Sbjct 40706 AATAGATCCTTGATTCAAAACAATCGCTGT-TTTAAGT---TCTTCCGACCACAACCCTA 40761 Query 37105 CTTA--TTAGTTCTCTCAATAGG-TGTGGATTTACAACCTGAAAATCTCCAGATAATACT 37161 || | || || |||| | | | ||| |||||||||||||| || ||| ||| || Sbjct 40762 ATTTAGTAAGGTCA-TCAAGAAGATATGGGTTTACAACCTGAAATTCACCACTTAACACA 40820 Query 37162 CTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGA 37221 | | | | ||| ||||| ||| | ||||| | || ||||| || | | || ||| Sbjct 40821 CGACGAGAAAATACGTTGCTTGTAAAGGGTTCTGTTGATTCATTGTTCCCGAGGATCTGA 40880 Query 37222 GATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCAT 37273 ||||| |||||||| |||||||| || | |||||| ||||| | || |||| Sbjct 40881 GATGTTGATGCAGTTGGCATTGGGGCCAATAGAAGACTATTCCGTAAACCAT 40932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 170/252 (67%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 38230 CCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATC 38289 ||||| |||| || || | |||| ||| ||||| || | || |||||| | Sbjct 44523 CCATTTGATTCCCCATTCGTCCCGGCTATGTAAGTCCCAAGACTGCGAATATTA----TG 44578 Query 38290 GACAAT----CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATC 38345 |||| | || || || || |||| ||| ||||| | || |||| |||| || || Sbjct 44579 GACATTTACTCCAATACCCCCAGCATTTTTAGATATAATGGCACATTCCTTTAGAGTGTC 44638 Query 38346 AAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGG 38405 | | ||||||||||| || ||||| || || | | | || ||||| || | ||| || Sbjct 44639 ATAAATACCTTCTATGCTATCATCTTTCATAGTGATAAGGAAGCAACTTGAAAGTTGTGG 44698 Query 38406 CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAA 38465 || ||||| | ||||| | || || || |||||| | ||||||||||| |||| Sbjct 44699 TTTCGGTGTTCCAGAATTAAAAAGAGTCGGTGAAGCATGTGTAAACCATTTTTCAGACAT 44758 Query 38466 ATAATTATATGT 38477 |||||||| Sbjct 44759 TAGGTTATATGT 44770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468378104885120