Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5310 259 6e-64 seq4842 84.2 3e-11 >seq5310 Length=161011 Score = 259 bits (286), Expect = 6e-64 Identities = 648/980 (66%), Gaps = 61/980 (6%) Strand=Plus/Plus Query 35814 AAAAATCAACATCTAGAGAAAA---ATGA-TTG-------TCTT-CTTGAGACATAACTC 35861 ||||||| |||| | |||||| |||| ||| |||| || |||||||||| | Sbjct 62587 AAAAATCTTCATCGATAGAAAAGTTATGAGTTGGTTCGCCTCTTGCTCGAGACATAACAC 62646 Query 35862 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA 35921 | ||| |||||||| || || ||||| ||||| || || || ||||||| |||| Sbjct 62647 CAGCACGTTGATATTCACCAACCCGCTTTTCAAAAAAGTTCGTCTTGCCTTCTATGGATA 62706 Query 35922 TATTTTCCATGAAATCGAATGGATT--------GATAAC--------------ATTATAA 35959 |||||||||| ||||| || ||||| ||||| |||| || Sbjct 62707 TATTTTCCATAAAATCAAAAGGATTATCAGAGTGATAAATCTAAACAGAAACAATTAAAA 62766 Query 35960 ------------AtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCT 36007 | ||||| | || | |||| | || | ||| || | ||||| Sbjct 62767 CGAAAACCACAAACTTTTTCGTAACCGAGTTCAACCAGCAGCCGATCAGCAATGAATTCA 62826 Query 36008 ATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA 36067 ||||| ||| | | ||||||||||| || | | ||||| | || ||| Sbjct 62827 ATATACTGGCACATTAGCTTGCAATTCATTCCAATTAAACTGACTGGCAAGGCTTCAGAC 62886 Query 36068 AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTC 36127 ||||| |||||||| || ||||| || | ||||| || || | || Sbjct 62887 AGAAACTCTTGTTCGATTAGCACCGCCTCCTTCATAATCGACTCAACGCGAACC---CTA 62943 Query 36128 GGTGGATAC--AATAAA-TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCG 36184 | || | ||||| || ||||||| | ||| ||||| || || |||| || ||| Sbjct 62944 GAAGGCTTTTTAATAATGTGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCG 63003 Query 36185 TCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGC 36244 |||||||| ||||| || || ||| | | ||| ||||| || || ||||| || ||| Sbjct 63004 TCTCTACTGATTAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGC 63063 Query 36245 CAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATA 36304 |||||||| | ||| || || || || |||| |||||||||||| |||||||||| Sbjct 63064 CAAAATATAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACC 63123 Query 36305 AGTCTCTCTCCATAACCGGCACT----GTCATGTATCCACTTTTGAGCCCAATCGGCCTT 36360 | | ||| || ||| ||| ||| ||||| | ||||| | || || Sbjct 63124 AAGCGTTCTGCA-AACGTAGACTTAGAATCACCAATCCAATCCAATGCCCATTGAGCTTT 63182 Query 36361 CTTTTTTACACAAGGCA--TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTA 36418 || |||||||| | ||| || ||||||||| || ||| ||| | |||| ||| Sbjct 63183 TTTCGCTACACAAGTTAGGTTG-CT-TATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAG 63240 Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 ||||| | ||| ||||| || | ||| |||||||| |||||||| || || || || Sbjct 63241 TCTTTGATATACGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCT 63300 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 36538 || || | || || ||||| | | |||| | |||||||| ||| || ||| ||||| Sbjct 63301 ATCTGCATCCCATAAAAACAGCGAACCTCCGGGATCTGTACCTCTTGACTAAAGCGTTCC 63360 Query 36539 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 36598 ||| ||||| |||||||| ||||| || ||||| || ||||| |||| | |||| Sbjct 63361 AGTAAGTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATA 63420 Query 36599 AAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACT 36658 |||| ||| | ||| | ||||| ||| ||||| || | |||||| Sbjct 63421 AAATGACGTTCCCCAACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACC 63480 Query 36659 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATAT 36718 ||||| || ||||| || || ||| | |||||||| || | || |||||| ||||||||| Sbjct 63481 TCTTCTACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATAT 63540 Query 36719 TGAATTGGAAAAATAACAAA 36738 | || || |||| |||||| Sbjct 63541 TCTATGGGGAAAAGAACAAA 63560 >seq4842 Length=69696 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/252 (68%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 66273 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATT 66332 ||||| ||| ||||| ||||||| || || | ||| ||||||||| | Sbjct 44523 CCATTTGATTCCCCATTCGTCCCGGCTATGTAAGTCCCAAGACTGCGAATATTATGGACA 44582 Query 66333 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 66392 || || || ||||| || ||||||| || | || ||| |||| || ||||| Sbjct 44583 TTTACTCCAATACCCCCAGCATTTTTAGATATAATGGCACATTCCTTTAGAGTGTCATAA 44642 Query 66393 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG--GTGAC 66450 || || ||||| |||||||| |||| | | || || || || || | ||| || | Sbjct 44643 ATACCTTCTATGCTATCATCTTTCATAGTGATAAGGAAGCAACTTGAAAGTTGTGGTTTC 44702 Query 66451 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 66510 | ||||| | |||||| | || || ||||| || ||||||||||||||||| | || Sbjct 44703 GGT--GTTCCAGAATTAAAAAGAGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATTA 44760 Query 66511 GATTGTACGTCT 66522 | || || |||| Sbjct 44761 GGTTATATGTCT 44772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657966726096320