Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4124 104 2e-17 seq4755 96.9 3e-15 >seq4124 Length=298687 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | ||| | ||| | |||||||| || |||||||| || || Sbjct 14506 CCACCACGTAGACGGAGAACAAGGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCAGAT 14565 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| | |||| |||||| || || ||||| Sbjct 14566 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 14625 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || |||||| ||| | | || | ||||| | ||||| ||| Sbjct 14626 ATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACC 14685 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||| || ||||| || || ||||| || ||||| Sbjct 14686 TCCAACGTAATCGTCTTTCCCGTCAAAGTCTTAACGAAAATCTGCAT 14732 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | ||| | ||| | || ||||| || |||||||| || || Sbjct 13822 CCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 13881 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| | |||| |||||| || || ||||| Sbjct 13882 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 13941 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || |||||| ||| | | || | ||||| | ||||| ||| Sbjct 13942 ATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACC 14001 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||| || ||||| || || || || || |||||| Sbjct 14002 TCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCATA 14049 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | ||| | ||| | || ||||| || |||||||| || || Sbjct 14050 CCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 14109 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| | |||| |||||| || || ||||| Sbjct 14110 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 14169 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || |||||| ||| | | || | ||||| | ||||| ||| Sbjct 14170 ATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACC 14229 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || ||||| || || || || || |||||| Sbjct 14230 TCCAATGTGATTGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCATA 14277 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | ||| | ||| | || ||||| || |||||||| || || Sbjct 14278 CCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 14337 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| | |||| |||||| || || ||||| Sbjct 14338 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 14397 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || |||||| || | | || | ||||| | ||||| ||| Sbjct 14398 ATACCTTCTTTATCTTGGATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACC 14457 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||| || ||||| || || || || || |||||| Sbjct 14458 TCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCATA 14505 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||| | || ||||| || |||||||| || || Sbjct 13594 CCACCACGAAGACGAAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 13653 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| | |||| |||||| || || ||||| Sbjct 13654 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 13713 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| | || | | || | ||||| | ||||| || Sbjct 13714 ATACCTTCTTTATC-TTGAATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAAC 13772 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | |||||| || ||||| || || || || || |||||| Sbjct 13773 CTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCATA 13821 >seq4755 Length=318840 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | || || || ||||| | || ||||| ||||| ||||| || || | Sbjct 280589 CCACCTCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 280530 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| ||||||||| |||| | |||||| ||||||||||| Sbjct 280529 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 280470 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || ||| || ||| | | || | ||||| | ||||| || Sbjct 280469 ATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACT 280410 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||| || |||| || || || ||||| |||||| Sbjct 280409 TCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCATA 280362 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| ||||| ||||| || || | Sbjct 279905 CCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 279846 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| ||||||||| |||| | |||||| ||||||||||| Sbjct 279845 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 279786 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || ||| || ||| | | || | ||||| | ||||| || Sbjct 279785 ATCCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACT 279726 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 || | || | |||||| || |||| || ||||| ||||| ||||| || Sbjct 279725 TCCAAAGTAATCGTCTTACCAGTCAGAGTCTTTACAAATATCTGCATTGC 279676 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| ||||| ||||| || || | Sbjct 280133 CCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 280074 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| ||||||||| |||| | |||||| ||||||||||| Sbjct 280073 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 280014 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || ||| || ||| | | || | ||||| | ||||| || Sbjct 280013 ATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACT 279954 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||| || |||| || || || ||||| |||||| Sbjct 279953 TCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCATA 279906 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| ||||| ||||| || || | Sbjct 280361 CCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 280302 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| ||||||||| |||| | |||||| ||||||||||| Sbjct 280301 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 280242 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || ||| || ||| | | || | ||||| | ||||| || Sbjct 280241 ATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACT 280182 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||| || |||| || || || ||||| |||||| Sbjct 280181 TCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCATA 280134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495908682361600