Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5310 268 1e-66 seq4842 95.1 2e-14 >seq5310 Length=161011 Score = 268 bits (296), Expect = 1e-66 Identities = 641/970 (66%), Gaps = 46/970 (5%) Strand=Plus/Plus Query 49645 TCTT-CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 49703 |||| || |||||||||| || ||| |||||||| || || ||||| ||||| || Sbjct 62627 TCTTGCTCGAGACATAACACCAGCACGTTGATATTCACCAACCCGCTTTTCAAAAAAGTT 62686 Query 49704 AGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG-------------- 49749 || || ||||| | |||||||||||||| |||||||| ||||| Sbjct 62687 CGTCTTGCCTTCTATGGATATATTTTCCATAAAATCAAAAGGATTATCAGAGTGATAAAT 62746 Query 49750 -------GTAACATT-------------ATAAAtttttttAAATCCCAATTCAGAAATCA 49789 | |||| | | ||| ||||| | || | |||| | || Sbjct 62747 CTAAACAGAAACAATTAAAACGAAAACCACAAACTTTTTCGTAACCGAGTTCAACCAGCA 62806 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 | ||| || | ||||| ||||| ||| | | ||||||||||| || | Sbjct 62807 GCCGATCAGCAATGAATTCAATATACTGGCACATTAGCTTGCAATTCATTCCAATTAAAC 62866 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909 | ||||| | || ||| ||||| |||||||| || ||||| || | ||||| | Sbjct 62867 TGACTGGCAAGGCTTCAGACAGAAACTCTTGTTCGATTAGCACCGCCTCCTTCATAATCG 62926 Query 49910 ATCTAACGGTTTCTTCACTCGGTGGATGC--AATAAA-TGTTTAAACATCAAACATGCGA 49966 | |||| | || | || | ||||| || ||||||| | ||| |||| Sbjct 62927 ACTCAACGCGAACC---CTAGAAGGCTTTTTAATAATGTGCTTAAACAGAAGACAAGCGA 62983 Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026 | || || || | || ||||||||||| |||| || || ||| | | ||| |||| Sbjct 62984 AGTCACAATGTAATCCTTCGTCTCTACTGATTAACTCATTACTAAAGGACAATCCAGGCA 63043 Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTT 50086 | || || ||||| || ||||||||||| | ||| || || || || || | ||||| Sbjct 63044 TAAGTCCTCGCTTCTTCAGCCAAAATATAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTT 63103 Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATGTATCCACT 50143 ||||||| ||||||||||| | | ||| || | | | | ||| ||||| | Sbjct 63104 CTACTGCTGCAAAGGCAACCAAGCGTTCTGCAAACGTAGACTTAGAATCACCAATCCAAT 63163 Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC-TATGGCATTAAAGAGA 50202 ||||| | || || || |||||||| | ||| | ||| ||||| || ||| Sbjct 63164 CCAATGCCCATTGAGCTTTTTTCGCTACACAAGTTA-GGTTGCTTATAGCATTGAAAAGA 63222 Query 50203 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 50262 ||| | |||| ||| ||||| | ||| |||||||| | ||| |||||||| ||| Sbjct 63223 AAGTCTCTTTCTTTAGAGTCTTTGATATACGTATCGATTAGTAGAGAGTACATTTCAGAA 63282 Query 50263 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 50322 ||||| || || || || ||||| | || || ||||| | | |||| | ||||| || Sbjct 63283 TGAATATTCTCGATAGCTATCTGCATCCCATAAAAACAGCGAACCTCCGGGATCTGTACC 63342 Query 50323 TCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382 ||| || ||| ||||| ||| ||||| |||||||| ||||| || ||||| || Sbjct 63343 TCTTGACTAAAGCGTTCCAGTAAGTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAAT 63402 Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATA 50442 ||||| |||| | ||||||||| ||| | ||| | ||||| ||| Sbjct 63403 GCCAACACATATGATATAAAATGACGTTCCCCAACCTTAAGTGACTCCCAATGTGTGAAG 63462 Query 50443 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 50502 ||||| || | ||| || ||||| || ||||| || || ||| | |||||||| || | | Sbjct 63463 TCTTTGGACAAATCCACCTCTTCTACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAA 63522 Query 50503 TTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGG 50562 | |||||| |||||||||| || ||||||| |||||| | | ||| |||||| ||| Sbjct 63523 TGCCAGATATCATGATATTCTATGGGGAAAAGAACAAAACGGTGTGGGTTTGGTTTAAGC 63582 Query 50563 ATCGGTTCCA 50572 | ||||||| Sbjct 63583 AAGGGTTCCA 63592 >seq4842 Length=69696 Score = 95.1 bits (104), Expect = 2e-14 Identities = 176/255 (69%), Gaps = 10/255 (4%) Strand=Plus/Plus Query 80152 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA---CTGGCACGAATATTACTA 80208 ||||| ||| ||||| ||||||| || || | ||| ||| ||||||||| Sbjct 44523 CCATTTGATTCCCCATTCGTCCCGGCTATGTAAGTCCCAAGACTG---CGAATATTATGG 44579 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 | || || || ||||| || ||||||| || | || ||| |||| || ||| Sbjct 44580 ACATTTACTCCAATACCCCCAGCATTTTTAGATATAATGGCACATTCCTTTAGAGTGTCA 44639 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTG--GT 80326 || || || |||||||||||||| |||| | | || || || || || | ||| || Sbjct 44640 TAAATACCTTCTATGCTATCATCTTTCATAGTGATAAGGAAGCAACTTGAAAGTTGTGGT 44699 Query 80327 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 80386 || ||||| | |||||| | || || ||||| || ||||||||||||||||||| Sbjct 44700 TTCGGT--GTTCCAGAATTAAAAAGAGTCGGTGAAGCATGTGTAAACCATTTTTCAGACA 44757 Query 80387 GTAGATTGTACGTCT 80401 ||| || || |||| Sbjct 44758 TTAGGTTATATGTCT 44772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718043910038720