Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq5310 185 8e-42 >seq5310 Length=161011 Score = 185 bits (204), Expect = 8e-42 Identities = 591/915 (65%), Gaps = 50/915 (5%) Strand=Plus/Plus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||||||||| ||| | |||||||| ||||| || || ||||| | ||||||||||| Sbjct 62654 TTGATATTCACCAACCCGCTTTTCAAAAAAGTTCGTCTTGCCTTCTATGGATATATTTTC 62713 Query 13643 CATAAAATCAAATGGATTT----ATTGACA----TAAACA-------------------- 13674 |||||||||||| ||||| | ||| | |||||| Sbjct 62714 CATAAAATCAAAAGGATTATCAGAGTGATAAATCTAAACAGAAACAATTAAAACGAAAAC 62773 Query 13675 ------CTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATT 13728 |||| || |||| ||||| | || | | ||||||||| || |||||||| | Sbjct 62774 CACAAACTTTTTCGTAACCGAGTTCAACCAGCAGCCGATCAGCAATGAATTCAATATACT 62833 Query 13729 GAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATT 13788 | |||||| | |||||||| || |||| | || || | | | | ||| | Sbjct 62834 GGCACATTAGCTTGCAATTCATTCCAATTAAACTGACTGGCAAGGCTTCAGACAGAAACT 62893 Query 13789 CTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGAT 13848 ||| ||| || ||| ||||| || ||||| || | ||||||| | Sbjct 62894 CTTGTTCGATTAGCACCGCCTCCTTCATAATCGACTCAACGCGAACCCTAGAAGGC---T 62950 Query 13849 ATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTAC 13905 ||| | | || ||||| | | ||| || || |||||||| | || || ||||||| Sbjct 62951 TTTTAATAATGTGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTCTAC 63010 Query 13906 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13965 | || | || || ||| | ||||| ||||| | |||||| || || | |||||||| Sbjct 63011 TGATTAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATA 63070 Query 13966 TTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14025 | || || || ||||| || || | ||| || ||||| ||||| || | || |||| Sbjct 63071 TAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTT 63130 Query 14026 CTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14085 || |||||| | || | ||||| | ||||||| || |||||| | Sbjct 63131 CTGCAAACGTAGACTTAGAATCACCAATCCAATCCAATGCCCATTGAGCTTTTTTCGCTA 63190 Query 14086 TAAAATCCA--TTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAG--TACTTGAA 14141 | || | ||| || |||||||| || | | | || | ||||||| | |||| Sbjct 63191 CACAAGTTAGGTTGCTT--ATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTTGAT 63248 Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 || | ||||| || |||| ||||||||||| || || || || ||||||||||| Sbjct 63249 AT--ACGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTGC 63306 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAA 14260 | |||||||| || | | | |||| ||||| || || | ||| | ||| || Sbjct 63307 ATCCCATAAAAACAGCGAACCTCCGGGATCTGTACCTCTTGACT-AAAGCGTTCCAGTAA 63365 Query 14261 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14320 ||||| |||||| |||||||| || ||||| |||||||| | | | ||||| | Sbjct 63366 GTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAAATG 63425 Query 14321 TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATC 14380 | || || || ||| | ||||| | || || || || | ||| || || || Sbjct 63426 ACGTTCCCCAACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTCTTC 63485 Query 14381 AACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATAT 14440 || ||||| ||| ||| || || ||||| || | ||| || || | |||| ||| Sbjct 63486 TACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTCTAT 63545 Query 14441 AGGAAAAACTACAAA 14455 || |||| ||||| Sbjct 63546 GGGGAAAAGAACAAA 63560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479577797163200