Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5310 199 4e-46 >seq5310 Length=161011 Score = 199 bits (220), Expect = 4e-46 Identities = 594/915 (65%), Gaps = 50/915 (5%) Strand=Plus/Plus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||||||||| ||| | |||||||||||||| || || ||||| | ||||||||||| Sbjct 62654 TTGATATTCACCAACCCGCTTTTCAAAAAAGTTCGTCTTGCCTTCTATGGATATATTTTC 62713 Query 13431 CATAAAATCGAATGGATT--------------TGTTGACATAAACA-------------- 13462 ||||||||| || ||||| | | ||| ||||| Sbjct 62714 CATAAAATCAAAAGGATTATCAGAGTGATAAATCTAAACAGAAACAATTAAAACGAAAAC 62773 Query 13463 ------CTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATT 13516 |||| || |||| ||||| | | | | ||||||||| || |||||||| | Sbjct 62774 CACAAACTTTTTCGTAACCGAGTTCAACCAGCAGCCGATCAGCAATGAATTCAATATACT 62833 Query 13517 GAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATT 13576 | |||||| | |||||||| || |||| | || || | | || | ||| | Sbjct 62834 GGCACATTAGCTTGCAATTCATTCCAATTAAACTGACTGGCAAGGCTTCAGACAGAAACT 62893 Query 13577 CTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGAT 13636 ||| ||| || ||| ||||| || ||||| || || | ||||||| | Sbjct 62894 CTTGTTCGATTAGCACCGCCTCCTTCATAATCGACTCAACGCGAACCCTAGAAGGC---T 62950 Query 13637 ATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTAC 13693 ||| | | || ||||| | | ||| || || |||||||| | || || ||||||| Sbjct 62951 TTTTAATAATGTGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTCTAC 63010 Query 13694 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13753 | || | || || ||| | ||||| ||||| | |||||| || || | |||||||| Sbjct 63011 TGATTAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATA 63070 Query 13754 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTT 13813 | || ||||| ||||| || || | ||| || ||||| ||||| || | | |||| Sbjct 63071 TAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTT 63130 Query 13814 CTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 13873 || |||||| | || | ||||| | ||||||| || |||||| | Sbjct 63131 CTGCAAACGTAGACTTAGAATCACCAATCCAATCCAATGCCCATTGAGCTTTTTTCGCTA 63190 Query 13874 TAAAATCCA--TTGTTTCGATTGCATTGAATA-AATGT-TCCTTCTCTTTAGTACTTGAA 13929 | || | ||| || || |||||||| | || || || |||| | ||| |||| Sbjct 63191 CACAAGTTAGGTTGCTT--ATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTTGAT 63248 Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 || | ||||| || |||| ||||||||||| || || || || ||||||||||| Sbjct 63249 AT--ACGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTGC 63306 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAA 14048 | ||||||||||| | | | || | |||||||| || | ||| | ||| || Sbjct 63307 ATCCCATAAAAACAGCGAACCTCCGGGATCTGTACCTCTTGACT-AAAGCGTTCCAGTAA 63365 Query 14049 GTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14108 |||||| ||| || |||||||| || ||||| |||||||| | | | ||||| | Sbjct 63366 GTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAAATG 63425 Query 14109 TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATC 14168 | || || || ||| | ||||| | || || || || | ||| || || || Sbjct 63426 ACGTTCCCCAACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTCTTC 63485 Query 14169 AACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATAT 14228 || ||||| ||| ||| || || ||||| || | ||| || || | |||| ||| Sbjct 63486 TACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTCTAT 63545 Query 14229 AGGAAAAACTACAAA 14243 || |||| ||||| Sbjct 63546 GGGGAAAAGAACAAA 63560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478438953846720