Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_004037.2 Length=29576 Score E Sequences producing significant alignments: (Bits) Value seq16058 107 4e-19 >seq16058 Length=1913 Score = 107 bits (118), Expect = 4e-19 Identities = 213/313 (68%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 16002 AACATTGGGGCTAGGTGGTCATTAGATGTTATGGATACTGTAAATCCATTTAATCACCAC 16061 |||||||| || |||||||| | || ||||| | ||| ||||||||||| |||||| Sbjct 75 AACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCAC 134 Query 16062 AGAAATTCAGGACTAAAGTATAGGTCACAACTGTTAGGAAATGGAAGATAT-TGCAGATT 16120 | ||| | || ||| || |||| || | || ||||| | ||| ||| || Sbjct 135 CGGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTATGTGCCT-TT 193 Query 16121 TCACATTCAAGTACCTCAAAAATTTTTTCCTATAAAAAATCTTTTGTTGCTGCCAGGAAC 16180 ||||| ||||| ||||||||||| ||| || | || || || | | || || || | Sbjct 194 CCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTC 253 Query 16181 ATATAATTATGAATGGTACTTTAGAAAGGATCCCAACATGGTTTTTCAGTCTACTTTAGG 16240 || | ||||| ||| |||| ||||||| | |||||||| | || | | | || Sbjct 254 CTACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTCCCTTGG 313 Query 16241 TAACGACCTTAGAGCAGATGGCGCAACTATTACATACACCAACATAAATTTATATGTTTC 16300 || ||||| ||| ||||||| || | || | | ||||| ||| || | |||| | Sbjct 314 AAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCATCAACCTCTATGCCAC 373 Query 16301 ATTTTTCCCTATG 16313 || ||||| ||| Sbjct 374 CTTCTTCCCCATG 386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94493485022688