Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3731 93.3 3e-14 >seq3731 Length=1156867 Score = 93.3 bits (102), Expect = 3e-14 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || |||| ||||||||| |||||||| | || |||||||| | || | ||| ||||| Sbjct 1054681 TCTTCCAGTTGTTTGCCAGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCCTCTTTA 1054622 Query 43015 TCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATA 43074 || ||| | || ||| ||| ||| || ||| ||| || || | ||||||| Sbjct 1054621 TCTTGGATTTTAGCNTTAACTGCTTCAATTGTATCAGCAGGCTCAACTTCAAGCGTTATA 1054562 Query 43075 GTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 ||||| || || || |||||||||||||| ||||| || Sbjct 1054561 GTTTTCCCCGTAAGTGTTTTCACAAAAATCTGCATGTT 1054524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381253178348784